Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01128 ATGTGTCCCCTAACACCAAGTGACCTGCAGAGAATTTTTGAGAAGGTGGACAAGAATGGAGATGGGTTTTTGAGCCTTGAGGAGCTGAACACGCTGCTGGAGAAGACGGGGTTCAGTTACAGCATCGAGGAGTTGGAGTCCCTGGTGGGAAAGAAGAGCCTTGACATGAGTGAGTTTGTGTTCTTTTATGAATCTATGTTGAAGCAGAACAATGAGGAGGAAGAAGGGGCTAATGGGGTTGATAGTGATGAGGTGGTTGAGGAGGTGGACAAGGACCTTGTGAAGGCCTTCAAGGTGTTTGATTTGGATGGTGATGGCTTCATCACAAGCCACGAGCTCGAGTGTGTGCTGAAGAGGCTTGGCATGTGGGATGATGAACGGTGTGGCAAGGATTGCGCATCCATGATTTGCTCCTATGATACTAATTTTGATGGCAAGCTTGATTTTCAGGAGTTCAAGGACATGATGCTGCTTACAACTTAG 483 0.4741 MCPLTPSDLQRIFEKVDKNGDGFLSLEELNTLLEKTGFSYSIEELESLVGKKSLDMSEFVFFYESMLKQNNEEEEGANGVDSDEVVEEVDKDLVKAFKVFDLDGDGFITSHELECVLKRLGMWDDERCGKDCASMICSYDTNFDGKLDFQEFKDMMLLTT 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01128 160 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Pumo9g01128 160 Pfam EF hand 139 156 IPR002048 GO:0005509
Pumo9g01128 160 Pfam EF hand 9 33 IPR002048 GO:0005509
Pumo9g01128 160 ProSiteProfiles EF-hand calcium-binding domain profile. 127 160 IPR002048 GO:0005509
Pumo9g01128 160 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Pumo9g01128 160 Pfam EF-hand domain 93 121 IPR002048 GO:0005509
Pumo9g01128 160 ProSiteProfiles EF-hand calcium-binding domain profile. 88 123 IPR002048 GO:0005509
Pumo9g01128 160 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 61 156 - -
Pumo9g01128 160 SMART efh_1 131 159 IPR002048 GO:0005509
Pumo9g01128 160 SMART efh_1 8 36 IPR002048 GO:0005509
Pumo9g01128 160 SMART efh_1 92 120 IPR002048 GO:0005509
Pumo9g01128 160 Gene3D - 6 67 - -
Pumo9g01128 160 FunFam Probable calcium-binding protein CML44 5 66 - -
Pumo9g01128 160 FunFam Probable calcium-binding protein CML44 67 159 - -
Pumo9g01128 160 SUPERFAMILY EF-hand 8 157 IPR011992 -
Pumo9g01128 160 Gene3D - 68 160 - -
Pumo9g01128 160 CDD EFh 92 156 IPR002048 GO:0005509
Pumo9g01128 160 ProSitePatterns EF-hand calcium-binding domain. 101 113 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01128 Pumo-Chr9 33243941 33244810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01128 4 157 EF-hand Containing Proteins AT1G21550 41.667 1.01e-34 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01128 K13448 - gmx:100500561 275.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01128 9 33243941 33244810 Pumo9g01128 9 33243941 33244810 ECH
Pumo9g01128 9 33243941 33244810 Pumo10g01297 10 17016576 17017289 PCT