Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01297 ATGTTGTTTGCAAATATGTGTCTCCTAACAGCAACTGACTTAAAGCGTATTTTTGAGAAAGTGGACGTGAATGGAGACGGGTTCGTGAGCCTTGAGGAGCTGAATCGATTGCTCCAGATGACGGGCAATTCCCAGTATACCATACAAGAGTTGGAATCACTTGTGGAAAAGAAGAGTCTCGGTTTCAGCGATTTCTTGTTCTTTTACGACTCAATATATGGAGAGAGCAGGGGAGGTGAAGACAGAGAGTCAGAGGAGTTGGAGAACGATCTCGTGAAGACGTTTAAGGTGTTTGACTTGGATGGAGATGGGTTCATCACAAGCCAAGAGCTTCAGTCTGTATTGAAGAGGCTTGGCTTGTGGGATGAAACCAATGGCAAGGATTGCAGAAGCATGATTAGATTCTATGACACCAATTTGGATGGACGTCTTGATTTTCAGGAATTCAAGAGCATGATGTTGCTTACCAAAGCCTGA 477 0.4403 MLFANMCLLTATDLKRIFEKVDVNGDGFVSLEELNRLLQMTGNSQYTIQELESLVEKKSLGFSDFLFFYDSIYGESRGGEDRESEELENDLVKTFKVFDLDGDGFITSQELQSVLKRLGLWDETNGKDCRSMIRFYDTNLDGRLDFQEFKSMMLLTKA 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01297 158 Gene3D - 66 158 - -
Pumo10g01297 158 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 60 153 - -
Pumo10g01297 158 SUPERFAMILY EF-hand 13 154 IPR011992 -
Pumo10g01297 158 CDD EFh 90 153 IPR002048 GO:0005509
Pumo10g01297 158 SMART efh_1 13 41 IPR002048 GO:0005509
Pumo10g01297 158 SMART efh_1 90 118 IPR002048 GO:0005509
Pumo10g01297 158 SMART efh_1 128 156 IPR002048 GO:0005509
Pumo10g01297 158 Pfam EF-hand domain pair 90 153 IPR002048 GO:0005509
Pumo10g01297 158 ProSitePatterns EF-hand calcium-binding domain. 99 111 IPR018247 -
Pumo10g01297 158 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509
Pumo10g01297 158 FunFam Probable calcium-binding protein CML44 71 156 - -
Pumo10g01297 158 Gene3D - 2 65 - -
Pumo10g01297 158 ProSiteProfiles EF-hand calcium-binding domain profile. 124 158 IPR002048 GO:0005509
Pumo10g01297 158 FunFam Probable calcium-binding protein CML44 10 70 - -
Pumo10g01297 158 Pfam EF hand 13 40 IPR002048 GO:0005509
Pumo10g01297 158 ProSiteProfiles EF-hand calcium-binding domain profile. 86 121 IPR002048 GO:0005509
Pumo10g01297 158 ProSitePatterns EF-hand calcium-binding domain. 22 34 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01297 Pumo-Chr10 17016576 17017289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01297 9 154 EF-hand Containing Proteins AT1G21550 43.624 5.37e-36 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01297 K13448 - gmx:100527117 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01297 10 17016576 17017289 Pumo10g01297 10 17016576 17017289 ECH
Pumo9g01128 9 33243941 33244810 Pumo10g01297 10 17016576 17017289 PCT