Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00811 ATGGCGACCACGTCACTAGACGAGGAAACCGCAAAGAAAGTCGTACGACAGGTGGAGTTTTACTTCAGTGATAGCAACCTTCCCAGAGACAATTTTCTCAAGAAAACCGTCACCGAAAGCGAAGATGGCATGGTTAGTTTGGCTTTGATTTGCTCTTTTAATCGGATGCGAAAGCATCTTAATCTGGGGGATGTTAAGCCGGCCGAGGTGACCGAAGATACTGTTAAAGCTGTTGCTCAAGCTTTGAAAAATTCGGCTTTGGTCAGAGTCTCAGATGATGGGAGCAAAGTTGGCAGGGCAACTGAACTTCTGAAGCCAGAAGAGGTAATTGAGCAGGTAGAGATAAGAACAATTGCTGCATCACCATTTGAATTTGATGTGAAGCTTGAAGATGTGGAGACATTCTTTGGTCAATATGCCAAGGTTAACAGTGTTCGGTTGCCTCGCCATGTTGGAGACAAAAGGTTCTTTTGTGGCACTGCCCTTATTGAGTTCTCATCAGTTGAAGAAATGGAAAAAGTTTTGAAGCAAAGTCTGGTCTATGCGGGGGCTGAGCTAAAATTGAAGCCAAAGAAGGACTTTGATGCACAGAGAGAAAAAGATTTAGAAGAGCATGAAAAATTTAGTCCACCTGCAGGTTCAGATCACCAGAATAACACAAATACAGAAGCAAACTACCCTAAAGGCTTACTCATAGCCTTCAAACTAAAGAGCATTTCTGATGAAGTTCCTTCGAAACAAAATAACAGTGATCAACAAGCCAATGACAGTAATGTTGTCTCCGAAACAGATCAACAAAATCCCTCTGAAATTGCTGCCAAGGACAGTGACCAAAAGATATCAGAAAACATTGACAATGATAAAGAAAACAATGGGTTGAGTGAAGGAAAAGAGACTGAAGGTGGAGAAAAGATCAAAGAAACTGATGGAAAAAATTCTGCTGTTGCTGACAAGGACAAAAAGGATGTTGTCTCACGTGAGGATTTAAAGAGTGTCTTTGAGAAGTTTGGTACCGTGAAGTACATTGATTTCAAGATTGGAGATGAGTCAGGATACATTCGGTTTGAAGAACCTGAAGCTGCTCAGAAAGCTCGTGCTGCTGCAGTTCTTTCTGAAAAGGAGGGCTTAGTTGTGAAGAATTATATTGCTACTCTAGATCCAGTGACTGGTGAGGCTGAGAGAGAATACTGGACCCTGCTTCGTGGTAATCAAGTAAAGGTCCGAGGATGTACAAATAACCGAGGAAGGGGAGGAAAGCATGGTAGAGGGGGCAAATACTCCCGTTCCAGAGAGAATGTCTCTGCTGAAAATCGCCCAAACAAAGTTAGAAAGTCATAA 1338 0.4238 MATTSLDEETAKKVVRQVEFYFSDSNLPRDNFLKKTVTESEDGMVSLALICSFNRMRKHLNLGDVKPAEVTEDTVKAVAQALKNSALVRVSDDGSKVGRATELLKPEEVIEQVEIRTIAASPFEFDVKLEDVETFFGQYAKVNSVRLPRHVGDKRFFCGTALIEFSSVEEMEKVLKQSLVYAGAELKLKPKKDFDAQREKDLEEHEKFSPPAGSDHQNNTNTEANYPKGLLIAFKLKSISDEVPSKQNNSDQQANDSNVVSETDQQNPSEIAAKDSDQKISENIDNDKENNGLSEGKETEGGEKIKETDGKNSAVADKDKKDVVSREDLKSVFEKFGTVKYIDFKIGDESGYIRFEEPEAAQKARAAAVLSEKEGLVVKNYIATLDPVTGEAEREYWTLLRGNQVKVRGCTNNRGRGGKHGRGGKYSRSRENVSAENRPNKVRKS 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00811 445 SUPERFAMILY RNA-binding domain, RBD 324 404 IPR035979 GO:0003676
Pumo9g00811 445 CDD LA_like_plant 10 99 - -
Pumo9g00811 445 Gene3D - 296 416 IPR012677 -
Pumo9g00811 445 MobiDBLite consensus disorder prediction 275 319 - -
Pumo9g00811 445 MobiDBLite consensus disorder prediction 195 224 - -
Pumo9g00811 445 SMART la 8 100 IPR006630 -
Pumo9g00811 445 Gene3D - 106 200 IPR012677 -
Pumo9g00811 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 193 IPR000504 GO:0003723
Pumo9g00811 445 FunFam La protein 2 6 106 - -
Pumo9g00811 445 SUPERFAMILY RNA-binding domain, RBD 108 193 IPR035979 GO:0003676
Pumo9g00811 445 CDD RRM1_La 117 189 - -
Pumo9g00811 445 Pfam RNA binding motif 322 416 IPR014886 GO:0003723
Pumo9g00811 445 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 176 IPR000504 GO:0003723
Pumo9g00811 445 MobiDBLite consensus disorder prediction 424 445 - -
Pumo9g00811 445 SUPERFAMILY "Winged helix" DNA-binding domain 7 102 IPR036390 -
Pumo9g00811 445 ProSiteProfiles La-type HTH domain profile. 4 109 IPR006630 -
Pumo9g00811 445 MobiDBLite consensus disorder prediction 242 274 - -
Pumo9g00811 445 ProSiteProfiles xRRM domain profile. 306 433 IPR014886 GO:0003723
Pumo9g00811 445 SMART rrm1_1 117 189 IPR000504 GO:0003723
Pumo9g00811 445 SMART rrm1_1 313 379 IPR000504 GO:0003723
Pumo9g00811 445 PANTHER LUPUS LA PROTEIN-RELATED 10 282 IPR045180 -
Pumo9g00811 445 MobiDBLite consensus disorder prediction 408 445 - -
Pumo9g00811 445 MobiDBLite consensus disorder prediction 242 319 - -
Pumo9g00811 445 Pfam La domain 14 84 IPR006630 -
Pumo9g00811 445 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Pumo9g00811 445 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Pumo9g00811 445 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Pumo9g00811 445 MobiDBLite consensus disorder prediction 195 211 - -
Pumo9g00811 445 Gene3D - 2 104 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00811 Pumo-Chr9 16443666 16448224 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00811 K11090 - gmx:100792984 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00811 9 16443666 16448224 Pumo9g00811 9 16443666 16448224 ECH
Pumo9g00811 9 16443666 16448224 Pumo10g00915 10 11936963 11940572 PCT