Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00915 ATGGCAACGCAATCGTTGGATGAAGAAACAACTAAGAAAGTTATACGACAAGTGGAGTTTTATTTCAGCGATAGCAACCTTCTCAGCGATGGTTTTATGAGGAAGACTATCACTGAAAGCGAAGATGGCATGATTAGTTTGGCGCTGATTTGCTCATTTAATCGAATGCGAAAGCACCTTAATTTGGGTGATGTAAAGCCCGATGAAGTGACCCAAGATACCGTGAATGCTGTTGCTCAAACTTTGAGAAATTCGGCTTCACTCAAGGTCTCCGAAGATGGGAAAAAAGTTGGCAGGACAACTGAACTTCCAAAACTAGAAGAGGTTGAGCAGGTGGAGATAAGAACACTTGCTGTGTCACCATTTGAGCATGATCTGAAGCTTGAAGACGTGGAGAAATTCTTTGGGCAATATGCCAAGGTTAATAGTGTACGGCTTCCCCATCATGTTGGAGACAAAAAGTTCTTCTGTGGCACTGCTCTTGTTGAATTCTCTACAGAGGAAGAAGTAGAAAAAGTTATGAAGGAAAAATTGGTGTATGCCGGGGCTGAGTTAGAATTAAAACCCAAGAAGGACTTTGATGCTGAGAGAGAAAAAGAATTGGAAGATTTTAAAAAATCTCGTCCACCTGTGGGTTCAAATCACCAGAATAACTCAAATGTAGAAGAAGACTACCCTAAAGGCTTAATTATTGCCTTCAAACTAAAGAGCATTTCAGACGAAATTCCTTCGGAACAAGCCAATGATAATAGCGTTGTCTCCAAAACAGATGAAAAACCTCATTCTGAAATTGCTTCTGGGGAAAATGACCAGAAGGTAACAGAAAATGTTGACAATGATAATGAAAACAATGAGATGAAAGAAGCAGAGGAAACTGAAAGTGAAGAAAACAATGAGATGAAAGAAGGAAAGTTAACTGAAGGTGAGGAAAAGAAACGACAAGCTGGTGAAAAATTTTCTGCCGCTGCTTACAAGGACAACATGGATGTTGTCACACGTGAGGATTTGAAGAGTGTCTTTGAGAAATTTGGTACAGTGAAGTACATTGATTTCAAGATTGGAGCAGAGTCTGGATACATCCGATTTGAAGAAACTGAAGCTGCTCAGAAAGCTCGTGCTGCTGCAGTTATTTCAGAAAAGGACGGCTTGGTTGTCAAGAATTATATTGCTGCTCTAGATCCATTGACTGGTGAGGCCGAAAGAGAATACTGGAGCCTACTTCGTGGTAATCAAGGCAAGCACCGAGAATTTAAGAATAAGCAGGGAAGGGGAGGATGGCATGGGAGAGGCGGCAAACATGCACGCTCTAGAGGGAATGAGTCTAGAGATCGCCCAAATAAGGCTCAGAAAGTTGGTGCTGCATAA 1365 0.4147 MATQSLDEETTKKVIRQVEFYFSDSNLLSDGFMRKTITESEDGMISLALICSFNRMRKHLNLGDVKPDEVTQDTVNAVAQTLRNSASLKVSEDGKKVGRTTELPKLEEVEQVEIRTLAVSPFEHDLKLEDVEKFFGQYAKVNSVRLPHHVGDKKFFCGTALVEFSTEEEVEKVMKEKLVYAGAELELKPKKDFDAEREKELEDFKKSRPPVGSNHQNNSNVEEDYPKGLIIAFKLKSISDEIPSEQANDNSVVSKTDEKPHSEIASGENDQKVTENVDNDNENNEMKEAEETESEENNEMKEGKLTEGEEKKRQAGEKFSAAAYKDNMDVVTREDLKSVFEKFGTVKYIDFKIGAESGYIRFEETEAAQKARAAAVISEKDGLVVKNYIAALDPLTGEAEREYWSLLRGNQGKHREFKNKQGRGGWHGRGGKHARSRGNESRDRPNKAQKVGAA 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00915 454 CDD LA_like_plant 10 99 - -
Pumo10g00915 454 Pfam RNA binding motif 331 423 IPR014886 GO:0003723
Pumo10g00915 454 MobiDBLite consensus disorder prediction 297 314 - -
Pumo10g00915 454 FunFam La protein 2 6 106 - -
Pumo10g00915 454 Gene3D - 307 423 IPR012677 -
Pumo10g00915 454 MobiDBLite consensus disorder prediction 252 283 - -
Pumo10g00915 454 MobiDBLite consensus disorder prediction 433 447 - -
Pumo10g00915 454 Pfam La domain 14 84 IPR006630 -
Pumo10g00915 454 SUPERFAMILY "Winged helix" DNA-binding domain 6 106 IPR036390 -
Pumo10g00915 454 Coils Coil 272 306 - -
Pumo10g00915 454 SUPERFAMILY RNA-binding domain, RBD 331 413 IPR035979 GO:0003676
Pumo10g00915 454 SUPERFAMILY RNA-binding domain, RBD 108 191 IPR035979 GO:0003676
Pumo10g00915 454 Gene3D - 2 104 IPR036388 -
Pumo10g00915 454 ProSiteProfiles xRRM domain profile. 310 440 IPR014886 GO:0003723
Pumo10g00915 454 MobiDBLite consensus disorder prediction 414 454 - -
Pumo10g00915 454 Gene3D - 106 199 IPR012677 -
Pumo10g00915 454 PANTHER LUPUS LA PROTEIN-RELATED 10 301 IPR045180 -
Pumo10g00915 454 SMART la 8 100 IPR006630 -
Pumo10g00915 454 MobiDBLite consensus disorder prediction 198 223 - -
Pumo10g00915 454 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Pumo10g00915 454 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Pumo10g00915 454 PRINTS Lupus La protein signature 156 174 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Pumo10g00915 454 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 200 IPR000504 GO:0003723
Pumo10g00915 454 MobiDBLite consensus disorder prediction 242 314 - -
Pumo10g00915 454 SMART rrm1_1 116 188 IPR000504 GO:0003723
Pumo10g00915 454 SMART rrm1_1 322 386 IPR000504 GO:0003723
Pumo10g00915 454 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 176 IPR000504 GO:0003723
Pumo10g00915 454 ProSiteProfiles La-type HTH domain profile. 4 107 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00915 Pumo-Chr10 11936963 11940572 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00915 K11090 - gmx:100786016 756.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00915 10 11936963 11940572 Pumo10g00915 10 11936963 11940572 ECH
Pumo9g00811 9 16443666 16448224 Pumo10g00915 10 11936963 11940572 PCT