Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00609 ATGCCTTCCTTTTCCACTCTCAGAAGATCCTCACCCTCCCTCGCCCAACGCTTCTCAATCCAACGGTTCCAGATCCGCCACGCTTCCACCTCTTCCTCCGCCTCGTCGCTCCTCAACACCGCGAACCCGGTTCGAACCGGCTTCGGTCGAAACGCACTCTCGACCGTCCTCGCCGGCACCAGTGTTGTAGGGCTTCTTCTGTACGGCGCATACTCTTCTTCTTCGCCCAATTCCGAGTTCGACTCAGCTCTGCTGAAGAACTCAATCTCTTCTCTCGTTGACCGGTCAACGACGATTTCCGAGGACCAAGAACGACGCCGTTCCTTCTTTCCCAAATTTTCCCTCCCTGAAAGTTCCGGTAGCTTGCTATTTGGAGATGCGTTCAGGAGAAAGGTTTTCTTCAACTATGAGAAGCGCATACGGTTGCGAAGCCCTCCGGAAAAGGTTTTTGAGTACTTTGCATCTGATCGTAGTTCAGAAGGAGAAGTACTGATGAAACCAGCAGATCTAATGCGGGCAGTGGTTTCTGTTTTCCCTCCATCTGAATCCCACCTTGTTAGAGATGGATACTTGGAAGGAGAAAGGAGACCAGGCCATTTACGCTGCCCTCCTTCTGAATTTTTTATGCTATTTGATGTAAACAATGATGGGCTGATATCTTTTAAAGAGTACATCTTTTTTGTAACACTACTCAGCATCCCGGAATCAAGCTTTTCAGTGACATTTAAAATGTTTGATGTCGACAATAATGGGGAGATAAATAAGGAAGAATTCAAGAAAGTGATGGCATTGATGCGATCTCGTCATCGACAGGGTGTTCACCACAGAGATGGACTGCGAACTGGCTTAAAGGTGAGTGATTCTGTGGAAGATGGAGGGCTGGTAGAATACTTTTTTGATAAAGATGGAAATGGACGCCTCCAGCATGATAAGTTCGTAAAATTTTTTAGAGACTTGCATGACGAGATTCTGAGGCTGGAGTTTGCTCATTATGACTACCAATCTCGACAAACCATATCAGCCAAGGACTTTGCACTCTCCATGGTTGCTTCTGCCGACATGAGTCATCTAGGCAGGCTGCTTGAACGGGTTGATGGATTGAATGATGATCCACACCTTAAGGATGCACGTATCACATTTGAGGACTTCAAAAACTTTGCAGAGCTACGGAAAAAGTTACTTGCCATTTTCATTGGCCCTTTTCAGTTTTGGAGAAGTAAATGGCCTGTTGACAAGAGACGATTTTCAGAGAGCAGCATCACATGTATGGCATTTATATTTGATTTTTTGCTCAACATAGTATGCGGCGTATCTCTATCGGACAATGTGGTTGACATTGTTTTCCATTTGTTTGACACAAATCGGGATGGAAACCTAAGTTTTGATGAGTTTGTCAGAGTGCTACACAAGCGTGAAAGGGACATTGCACAACCTGTGGAGACAGGAATACTGGGTTGGTTGTCTCGCTGCTGGAACTCGTGCGACGCTGTCAGAGGTGATTTTCCTAGCGGCGACGCCACTGTGATCGCAAAGGCTAGGGCCACTGCCCAAATCGGAGCCAACACCATTGCCAAACCTCAAAAGGTTTGCGTGGCACCGCCGTTGCAGCATTCCAAGGCAACACAGCGGTTCTACAACCAAACCATCAAGGGCTCCTCCGATGCACGCCTCAGCAAGGTTCTCGCCGCCTCTCGACAACGTCACTAG 1707 0.4745 MPSFSTLRRSSPSLAQRFSIQRFQIRHASTSSSASSLLNTANPVRTGFGRNALSTVLAGTSVVGLLLYGAYSSSSPNSEFDSALLKNSISSLVDRSTTISEDQERRRSFFPKFSLPESSGSLLFGDAFRRKVFFNYEKRIRLRSPPEKVFEYFASDRSSEGEVLMKPADLMRAVVSVFPPSESHLVRDGYLEGERRPGHLRCPPSEFFMLFDVNNDGLISFKEYIFFVTLLSIPESSFSVTFKMFDVDNNGEINKEEFKKVMALMRSRHRQGVHHRDGLRTGLKVSDSVEDGGLVEYFFDKDGNGRLQHDKFVKFFRDLHDEILRLEFAHYDYQSRQTISAKDFALSMVASADMSHLGRLLERVDGLNDDPHLKDARITFEDFKNFAELRKKLLAIFIGPFQFWRSKWPVDKRRFSESSITCMAFIFDFLLNIVCGVSLSDNVVDIVFHLFDTNRDGNLSFDEFVRVLHKRERDIAQPVETGILGWLSRCWNSCDAVRGDFPSGDATVIAKARATAQIGANTIAKPQKVCVAPPLQHSKATQRFYNQTIKGSSDARLSKVLAASRQRH 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00609 568 SUPERFAMILY EF-hand 206 470 IPR011992 -
Pumo9g00609 568 Pfam EF hand 207 224 IPR002048 GO:0005509
Pumo9g00609 568 ProSitePatterns EF-hand calcium-binding domain. 452 464 IPR018247 -
Pumo9g00609 568 SUPERFAMILY EF-hand 295 470 IPR011992 -
Pumo9g00609 568 Pfam EF hand 241 264 IPR002048 GO:0005509
Pumo9g00609 568 ProSiteProfiles EF-hand calcium-binding domain profile. 439 474 IPR002048 GO:0005509
Pumo9g00609 568 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 27 495 IPR039800 GO:0005509|GO:0006851
Pumo9g00609 568 Gene3D - 272 398 - -
Pumo9g00609 568 ProSiteProfiles EF-hand calcium-binding domain profile. 233 268 IPR002048 GO:0005509
Pumo9g00609 568 Pfam EF-hand domain pair 436 469 IPR002048 GO:0005509
Pumo9g00609 568 CDD EFh 206 263 IPR002048 GO:0005509
Pumo9g00609 568 Gene3D - 122 271 - -
Pumo9g00609 568 ProSiteProfiles EF-hand calcium-binding domain profile. 299 322 IPR002048 GO:0005509
Pumo9g00609 568 SMART efh_1 237 265 IPR002048 GO:0005509
Pumo9g00609 568 SMART efh_1 293 319 IPR002048 GO:0005509
Pumo9g00609 568 SMART efh_1 443 471 IPR002048 GO:0005509
Pumo9g00609 568 SMART efh_1 203 231 IPR002048 GO:0005509
Pumo9g00609 568 ProSitePatterns EF-hand calcium-binding domain. 246 258 IPR018247 -
Pumo9g00609 568 CDD EFh_MICU 238 471 - -
Pumo9g00609 568 Gene3D - 426 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00609 Pumo-Chr9 10445251 10452331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00609 1 403 EF-hand Containing Proteins AT4G32060 60.048 6.49e-162 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00609 K22827 - gmx:100806575 777.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00609 9 10445251 10452331 Pumo10g00106 10 1738463 1741666 PCT