Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00515 ATGGATGAAGATCAAATAGAAGGTTGTGCGAGTGGGTATTTGAAGCAGAAAGGGTTTACGCAAAACGATGACCAACTTCAACTCACCAACACCGATTCCTCTCTTCAACCCGACACTCTCAATCGCGCCCAATTGGAGAGAGGTTCTGCAAGATACCATGATGGGTATGGTAGACTAAGATCATGGGCAAACAGGTCACTTGACTCATACAAGCATGAGTTGCTGCGTGTGCTTTATCCAGTATTTATCCATTGCTTCATGGATCTTGTGGCAAAAGGGCATTTTCAGGAAGCTTGGAACTTTTTCAATACCTTTCGTGAAGACCATGAAATGATGCACTCGCGAGACCTTCAAAAGTTGGAACTAGTTCTTTCTCCTGCTCATTTGGAGTATTCTTATGAGCTTCTGTTGCAACATCTGCACAGTATGCAATCCACCACAATAATTGGTATTATCAATGAACATATTAGATTCAAAGTTACAGCTGGACAACCTAGCTCAATTTCTGATGATCCAGAAGCTGTTACCCTCACTGGAGGCATCCAGGATGCAGCAAACCAGATAAATCAGAAAGAAATACTTTGGGGAATGTTTGAAGACTCTGTAGAAGACCACATAGATAAGGCTGGGGCCTTGCTTTCAGACACAGAAAAGGGTGAAGGGGAAGGCAAAGAGGGAGAGAATGATGAGATTAAGAAAAGGTCAGTTGGTGGAGGAAAGCAAGGTAGTTCAATAAAAAAGGTAAAAAAGGACAAAGCCGGTAGTGCAACAGGGAAAAATGCTAAACCAGAAGCTAACACTATATCTGCAGCAGCTCGGATTAAACAAGAGCTACCGCTTGCCCACAGTGTCTGGGATATGGCGAAACTTGAACAACAACCCACCACTTCTTTTTCGCAGGGAGGGAATGACACATCACAAAATGAACAATTATTGGGCAAAATAGTGGGAAAAGACAGTACACTTTGTTTCAAGGTCATTCAGGGCCAGTCTATGCAGCCACTTTTAGTCCTGCTGGGGATTTTATTCTTTCCTCTTCAGCAGACAAAACAATTCGATTATGGAGTACAAAGCTTAATGCCAATCTTGTTTGTTACAAGGGTCACAATTACCCTATCTGGGATGTTCAGTCCTGCGGGGCATTATTTTGCCAGCTGTTCACATGACAGAACAGCTAGGATTTGGTCCATGGACAGAATACAACCTTTAAGAATAATGGCAGGGCATTTGTCAGATGTTGATTGTGTGCAGTGGCATTCCAACTGCAACTACATTGCTACTGGCTCCAGTGACAAAACAGTTCGACTATGGGATGTGCAGAGTGGGGAATGTGTTCGGGTTTTCATTGGTCACAGGAGTATGATTTTGTCTTTGGCAATGTCTCCTGATGGTCGCTATATGGCATCTGGTGATGAAGATGGCACAATCATGATGTGGGACCTATCCAATGGCAGTTGTGTCACACCTTTAGTTGGTCACACCTCATGTGTCTGGTCACTAGCTTTCAGTTGTGAAGGTTCTCTTCTAGCATCCGGGTCCGCGGATTGCACTGTCAAATTTTGGGATGTAACTACAGGTATAAAGGTTCCAAGGAATGAAGAAAAAAGTGGGAATACTAACAGACTTAGATCATTGAAAAGCTTGCCAACCAAATCTGCTTCAGTTTACTCTCTCCAGTTTTCTCGAAGGAATCTTCTTTTTGCAGCTGGAGCTATAGCAAAAAGTGGCTGA 1731 0.4321 MDEDQIEGCASGYLKQKGFTQNDDQLQLTNTDSSLQPDTLNRAQLERGSARYHDGYGRLRSWANRSLDSYKHELLRVLYPVFIHCFMDLVAKGHFQEAWNFFNTFREDHEMMHSRDLQKLELVLSPAHLEYSYELLLQHLHSMQSTTIIGIINEHIRFKVTAGQPSSISDDPEAVTLTGGIQDAANQINQKEILWGMFEDSVEDHIDKAGALLSDTEKGEGEGKEGENDEIKKRSVGGGKQGSSIKKVKKDKAGSATGKNAKPEANTISAAARIKQELPLAHSVWDMAKLEQQPTTSFSQGGNDTSQNEQLLGKIVGKDSTLCFKVIQGQSMQPLLVLLGILFFPLQQTKQFDYGVQSLMPILFVTRVTITLSGMFSPAGHYFASCSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHSNCNYIATGSSDKTVRLWDVQSGECVRVFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLSNGSCVTPLVGHTSCVWSLAFSCEGSLLASGSADCTVKFWDVTTGIKVPRNEEKSGNTNRLRSLKSLPTKSASVYSLQFSRRNLLFAAGAIAKSG 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00515 576 ProSitePatterns Trp-Asp (WD) repeats signature. 509 523 IPR019775 -
Pumo9g00515 576 Gene3D TFIID subunit TAF5, NTD2 domain 46 166 IPR037264 -
Pumo9g00515 576 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 490 526 - -
Pumo9g00515 576 Gene3D - 364 439 IPR015943 GO:0005515
Pumo9g00515 576 Pfam WD40 associated region in TFIID subunit, NTD2 domain 48 130 IPR007582 -
Pumo9g00515 576 MobiDBLite consensus disorder prediction 212 264 - -
Pumo9g00515 576 SMART WD40_4 483 522 IPR001680 GO:0005515
Pumo9g00515 576 SMART WD40_4 361 396 IPR001680 GO:0005515
Pumo9g00515 576 SMART WD40_4 399 438 IPR001680 GO:0005515
Pumo9g00515 576 SMART WD40_4 441 480 IPR001680 GO:0005515
Pumo9g00515 576 Pfam WD domain, G-beta repeat 365 396 IPR001680 GO:0005515
Pumo9g00515 576 Pfam WD domain, G-beta repeat 442 480 IPR001680 GO:0005515
Pumo9g00515 576 Pfam WD domain, G-beta repeat 484 522 IPR001680 GO:0005515
Pumo9g00515 576 Pfam WD domain, G-beta repeat 401 438 IPR001680 GO:0005515
Pumo9g00515 576 Gene3D - 440 572 IPR015943 GO:0005515
Pumo9g00515 576 ProSiteProfiles Trp-Asp (WD) repeats profile. 406 447 IPR001680 GO:0005515
Pumo9g00515 576 ProSitePatterns Trp-Asp (WD) repeats signature. 425 439 IPR019775 -
Pumo9g00515 576 ProSiteProfiles Trp-Asp (WD) repeats profile. 376 405 IPR001680 GO:0005515
Pumo9g00515 576 ProSiteProfiles Trp-Asp (WD) repeats profile. 490 531 IPR001680 GO:0005515
Pumo9g00515 576 CDD WD40 376 571 - -
Pumo9g00515 576 SUPERFAMILY Taf5 N-terminal domain-like 43 160 IPR037264 -
Pumo9g00515 576 SUPERFAMILY WD40 repeat-like 375 568 IPR036322 GO:0005515
Pumo9g00515 576 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 406 443 - -
Pumo9g00515 576 ProSitePatterns Trp-Asp (WD) repeats signature. 467 481 IPR019775 -
Pumo9g00515 576 PRINTS G protein beta WD-40 repeat signature 425 439 IPR020472 -
Pumo9g00515 576 PRINTS G protein beta WD-40 repeat signature 467 481 IPR020472 -
Pumo9g00515 576 PRINTS G protein beta WD-40 repeat signature 509 523 IPR020472 -
Pumo9g00515 576 MobiDBLite consensus disorder prediction 212 236 - -
Pumo9g00515 576 CDD TAF5_NTD2 52 162 IPR007582 -
Pumo9g00515 576 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 376 573 - -
Pumo9g00515 576 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 448 485 - -
Pumo9g00515 576 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 489 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00515 Pumo-Chr9 8252376 8261363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00515 389 575 Miscellaneous Gene Families AT5G08390 28.342 1.94e-22 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00515 K03130 - qsu:112005972 672.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00515 9 8252376 8261363 Pumo10g00150 10 2236266 2245579 PCT