Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00150 ATGGAGGACGACAAAATAGTTGGATACGTTACCGCTTACCTTAAGAAGAAAGGGTTCACGCAAACCGAGAAGATTTTCCAGGAAGAATTCCAACACAACAAGTCCTCGTCCAATTCCCTTCTCGAACCCGACATTGCCAACCACCTCCTTGCTTTCTCTCAATTGGAGAGTGGTCCTGCTAGGTTCCACGATGGCTATAGCAAACTTAGAACATGGACTTATTCTTCACTAGATTTGTACAAGCACGAGCTGCTTCGTGTGCTTTATCCAGTGTTTATCCACTGCTTCATGGATCTTGTCGCCAAAGGACACCTTCAAGAAGCTCGGAACTTTTTCAATACTTTCCGTGAAGACCATGAAATGATGCATTTACGTGATCTTCAGAAGTTGGAAGGGGTTCTTTCTCCTACCCATCTGGAGGAAATGGAATTCGCTCATTCCCTTAGAAAGAGCAAATTCAACATAAAGATATGTGAGTATTCCTATGAGCTTCTGTTGCAACATCTACACAGTACACAATCCACCACTATACTTGGTATTATCAATGAGCATATTAACTTTCAAGTTACCCCTGGACAACCTAGCTTAATTTCTGATGATCCGGAAGCTGTTACCCTTACTGGAAGCAGCCAGGAAGCAGCAAACCAGATAAATCAAAAAGAAATTCATTGGGGGTTGCTTGAAGACTCTCTTGAAGAACGGCTGGAGAAGGCCGGGGCCTTGCTTTCAGACTCTGAAAAGGGTGAAGGGGAAGTAAAAGAGGGGGAGAATGAGGAGACTAAGAAAAGATCCATTGAAGGAGGAAAGCAAGGTGCTTCGGTCAAAAAAGTAAAAAAGGACAAGGGTGGAAGTGCAACTGGAAAAAGTGCAAAACCTGAAGCTACCACCGTACCTGCAGCTCCTCGAGTTAAGCCAGAACTCCCCTTGCCTGCAATCCCAACTGAGGTGGAACAGTCAATCCTTGAGGATTTAAGGAACCGTGTACAGCTTAGCAGTGTTGCATTGCCATCAGTTAGCTTTTACACATTTATCAATACACATAATGGTTTAAGCTGTTCATCAATATCCCATGACGGATCGTTGATTGCTGGAGGATTTTCTGACTCATCACTGAAGGTTTGGGATATGGCAAAGCTTGGACAACAGACTGCCAGTTCTCTTTCGCAGGGTGAGAATGACACATCACAAAATGAACAAATGTTTGGGCAAGGTGGTGGGAAAAGACAGTATACATTGTTTCAAGGTCATTCAGGTCCTGTTTATGCAGCCTCATTTAGTCCTGTTGGGGATTTTATCCTTTCATCCTCAGCAGACTCAACAATTAGATTATGGAGCACAAAACTTAATGCCAATCTTGTATGTTACAAGGGTCACAATTACCCTGTCTGGGATGTTCAGTTTAGTCCTGTAGGGCATTATTTTGCCAGCTCTTCACATGATAGAACTGCTAGGATTTGGTCCATGGACAGGATACAGCCATTAAGAATAATGGCAGGGCACTTGTCTGATGTTGATTGTGTGCAATGGCATGCCAACTGCAACTACATTGCTACTGGTTCCAGTGACAAAACAGTTCGACTATGGGATGTGCAGAGTGGTGAGTGCGTCCGGGTTTTCGTTGGTCATAGGGGTATGATTTTGTCTTTGGCAATGTCTCCTGACGGTCGTTATATGGCATCTGGTGATGAAGATGGCACGATCATGATGTGGGACCTCTCTAGTGGCCGCTGTCTCACACCTTTGATTGGCCACACGTCATGTGTTTGGTCCCTTGCTTTCAGTTCTGAAGGTTCGATTCTAGCATCTGGATCTGCTGATTGCACTGTAAAATTGTGGGATGTAAATACGAGCACCAAGGTTTCAAGGGCCGAAGAAAAAAGTGGGAATGCTAACAGACTTAGATCGCTGAAAACTCTACCAACGAAATCTACTCCAGTTTACTCATTGCGGTTTTCTCGAAGGAATCTTCTTTTTGCGGCTGGCGCTCTAGCAAAAAGTGGCTAA 2004 0.4421 MEDDKIVGYVTAYLKKKGFTQTEKIFQEEFQHNKSSSNSLLEPDIANHLLAFSQLESGPARFHDGYSKLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHLQEARNFFNTFREDHEMMHLRDLQKLEGVLSPTHLEEMEFAHSLRKSKFNIKICEYSYELLLQHLHSTQSTTILGIINEHINFQVTPGQPSLISDDPEAVTLTGSSQEAANQINQKEIHWGLLEDSLEERLEKAGALLSDSEKGEGEVKEGENEETKKRSIEGGKQGASVKKVKKDKGGSATGKSAKPEATTVPAAPRVKPELPLPAIPTEVEQSILEDLRNRVQLSSVALPSVSFYTFINTHNGLSCSSISHDGSLIAGGFSDSSLKVWDMAKLGQQTASSLSQGENDTSQNEQMFGQGGGKRQYTLFQGHSGPVYAASFSPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRGMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFSSEGSILASGSADCTVKLWDVNTSTKVSRAEEKSGNANRLRSLKTLPTKSTPVYSLRFSRRNLLFAAGALAKSG 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00150 667 ProSiteProfiles Trp-Asp (WD) repeats profile. 581 622 IPR001680 GO:0005515
Pumo10g00150 667 ProSitePatterns Trp-Asp (WD) repeats signature. 558 572 IPR019775 -
Pumo10g00150 667 ProSiteProfiles Trp-Asp (WD) repeats profile. 497 538 IPR001680 GO:0005515
Pumo10g00150 667 PRINTS G protein beta WD-40 repeat signature 432 446 IPR020472 -
Pumo10g00150 667 PRINTS G protein beta WD-40 repeat signature 600 614 IPR020472 -
Pumo10g00150 667 PRINTS G protein beta WD-40 repeat signature 516 530 IPR020472 -
Pumo10g00150 667 Pfam WD domain, G-beta repeat 452 487 IPR001680 GO:0005515
Pumo10g00150 667 Pfam WD domain, G-beta repeat 410 445 IPR001680 GO:0005515
Pumo10g00150 667 Pfam WD domain, G-beta repeat 345 375 IPR001680 GO:0005515
Pumo10g00150 667 Pfam WD domain, G-beta repeat 492 529 IPR001680 GO:0005515
Pumo10g00150 667 Pfam WD domain, G-beta repeat 575 613 IPR001680 GO:0005515
Pumo10g00150 667 Pfam WD domain, G-beta repeat 533 571 IPR001680 GO:0005515
Pumo10g00150 667 Gene3D - 251 492 IPR015943 GO:0005515
Pumo10g00150 667 SUPERFAMILY WD40 repeat-like 337 662 IPR036322 GO:0005515
Pumo10g00150 667 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 581 616 - -
Pumo10g00150 667 MobiDBLite consensus disorder prediction 240 300 - -
Pumo10g00150 667 FunFam Transcription initiation factor TFIID subunit 5 491 660 - -
Pumo10g00150 667 Gene3D TFIID subunit TAF5, NTD2 domain 41 190 IPR037264 -
Pumo10g00150 667 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 539 576 - -
Pumo10g00150 667 ProSiteProfiles Trp-Asp (WD) repeats profile. 455 496 IPR001680 GO:0005515
Pumo10g00150 667 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 2 662 - -
Pumo10g00150 667 MobiDBLite consensus disorder prediction 385 404 - -
Pumo10g00150 667 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 455 489 - -
Pumo10g00150 667 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 413 445 - -
Pumo10g00150 667 SUPERFAMILY Taf5 N-terminal domain-like 47 190 IPR037264 -
Pumo10g00150 667 ProSitePatterns Trp-Asp (WD) repeats signature. 600 614 IPR019775 -
Pumo10g00150 667 ProSiteProfiles Trp-Asp (WD) repeats profile. 343 376 IPR001680 GO:0005515
Pumo10g00150 667 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 497 534 - -
Pumo10g00150 667 Gene3D - 573 666 IPR015943 GO:0005515
Pumo10g00150 667 SMART WD40_4 532 571 IPR001680 GO:0005515
Pumo10g00150 667 SMART WD40_4 574 613 IPR001680 GO:0005515
Pumo10g00150 667 SMART WD40_4 406 445 IPR001680 GO:0005515
Pumo10g00150 667 SMART WD40_4 336 375 IPR001680 GO:0005515
Pumo10g00150 667 SMART WD40_4 490 529 IPR001680 GO:0005515
Pumo10g00150 667 SMART WD40_4 448 487 IPR001680 GO:0005515
Pumo10g00150 667 ProSiteProfiles Trp-Asp (WD) repeats profile. 539 580 IPR001680 GO:0005515
Pumo10g00150 667 ProSitePatterns Trp-Asp (WD) repeats signature. 516 530 IPR019775 -
Pumo10g00150 667 ProSiteProfiles Trp-Asp (WD) repeats profile. 413 445 IPR001680 GO:0005515
Pumo10g00150 667 Pfam WD40 associated region in TFIID subunit, NTD2 domain 57 185 IPR007582 -
Pumo10g00150 667 CDD WD40 413 662 - -
Pumo10g00150 667 MobiDBLite consensus disorder prediction 240 286 - -
Pumo10g00150 667 ProSitePatterns Trp-Asp (WD) repeats signature. 362 376 IPR019775 -
Pumo10g00150 667 Gene3D - 493 572 IPR015943 GO:0005515
Pumo10g00150 667 CDD TAF5_NTD2 59 191 IPR007582 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00150 Pumo-Chr10 2236266 2245579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00150 354 635 Miscellaneous Gene Families AT5G08390 23.793 4.01e-18 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00150 K03130 - gmx:100805953 1254.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00515 9 8252376 8261363 Pumo10g00150 10 2236266 2245579 PCT