Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00384 ATGGTGGATCCGTACGTTCTCGGTTGGATTCTGTGCTCCGTTCTGAGCCTCTTCGCACTCTACAGCCTGGCCTTCGGCGGAGCGAGGCGTTGCCACGCTTCGCCGGAAAAGAGGATTGAGTTGTCGGAGACCGTGACGACCTCCGCCGGAGAATGCAGATGGGAGAAACGCGACGGCGACGCTGACGTCATCATTGTCGGCGCCGGCGTCGCAGGCGCCGCTCTGGCGCACACTCTCGGCAAGGATGGGCGTCGGGTACACGTCATTGAAAGAGACCTGAGTGAGCCTGATCGAATTGTTGGAGAGTTGCTACAACCCGGTGGCTATCTCAAATTAATTGAGCTCGGACTTGAAGATTGTGTGGACAAAATTGATGCTCAGCAAGTGTTTGGTTATGCCCTTTTCAAGGATGGGAAACATACTCGTCTCTCTTACCCCTTGGAGAAGTTTCACTCAGATGTCTCTGGCAGAAGCTTTCACAATGGGCGTTTTATTCAGAGGATGCGGGAGAAGGCTGCCTCCCTTCCCAATGTACGATTGGAGCAAGGAACAGTCACTTCCCTAGTTGAAGAGAAGGGGACAATTAAAGGTGTGCAATATAAGAGCAAAGATGGTCAGGAATTGACAACTTTTGCACCTCTTACCATTGTTTGTGATGGCTGCTTCTCAAACTTACGCCGTTCTCTTTGTAATCCTAAGGTGGATATTCCCTCATGTTTTGTTGGTTTAGTCTTAGAGAACTGTGAACTTCCATGTGCAAATCATGGCCACGTCATACTGGGAGACCCTTCGCCAATCCTATTCTATCCTATAAGTAGCACAGAGATTCGCTGTCTGGTCGATGTTCCTGGTCAGAAGGTTCCTTCTATTTCAAATGGTGAAATGGAAAAGTATTTGAAGACAACGGTGGCTCCACAGATTCCACCTGAGCTTTATGATGCCTTCATAGCTGCTGTGGACAAAAAAGGCAACATAAGGACAATGCCAAACAGAAGCATGCCAGCAGATCCTCATCCTACACCTGGAGCCCTTCTGATGGGAGATGCATTCAACATGCGACATCCACTCACCGGGGGCGGAATGACTGTAGCATTGTCTGATATTGTGGTGCTGAGAAATCTTCTAAGGCCCTTGCCAGACCTGAATGATGCACCCACACTCTGCAAATACCTTGAATCCTTCTATACCTTGCGTAAGCCTGTGGCATCCACCATAAACACATTGGCAGGTGCTCTTTACAGAGTTTTTTGTGCATCCCCTGATCAGGCAAGGAGGGAAATGCGCCAAGCTTGCTTCGATTATCTCAGCCTTGGAGGCCTATTCTCGGAAGGACCGGTCTCTTTACTTTCTGGATTAAACCCTCGTCCCTTGAGCTTGGTTCTCCATTTCTTTGCTGTTGCAATATTTGGTGTTGGCCGTTTATTGTTACCATTTCCTTCACCTAAGCGAATATGGATTGGAGCCCGATTAATCTCTGGTGCATCTGCAATCATCCTCCCCATAATTAAGGCTGAAGGGATTCGTCAGATGTTTTTCCCTGCCACTGTTCCAGCTTATTACAGAAGTCCTCCAGTTGCACAAGAGTGA 1587 0.4871 MVDPYVLGWILCSVLSLFALYSLAFGGARRCHASPEKRIELSETVTTSAGECRWEKRDGDADVIIVGAGVAGAALAHTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVDKIDAQQVFGYALFKDGKHTRLSYPLEKFHSDVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLVEEKGTIKGVQYKSKDGQELTTFAPLTIVCDGCFSNLRRSLCNPKVDIPSCFVGLVLENCELPCANHGHVILGDPSPILFYPISSTEIRCLVDVPGQKVPSISNGEMEKYLKTTVAPQIPPELYDAFIAAVDKKGNIRTMPNRSMPADPHPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLRPLPDLNDAPTLCKYLESFYTLRKPVASTINTLAGALYRVFCASPDQARREMRQACFDYLSLGGLFSEGPVSLLSGLNPRPLSLVLHFFAVAIFGVGRLLLPFPSPKRIWIGARLISGASAIILPIIKAEGIRQMFFPATVPAYYRSPPVAQE 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00384 528 Gene3D - 55 432 IPR036188 -
Pumo9g00384 528 Pfam NAD(P)-binding Rossmann-like domain 65 91 - -
Pumo9g00384 528 Pfam Squalene epoxidase 211 485 IPR013698 GO:0004506|GO:0016020|GO:0050660
Pumo9g00384 528 PANTHER SQUALENE MONOOXYGENASE 13 524 IPR040125 GO:0004506|GO:0016126
Pumo9g00384 528 SUPERFAMILY FAD/NAD(P)-binding domain 61 436 IPR036188 -
Pumo9g00384 528 FunFam Squalene monooxygenase 2 55 436 - -
Pumo9g00384 528 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 211 226 - -
Pumo9g00384 528 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 62 84 - -
Pumo9g00384 528 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 340 355 - -
Pumo9g00384 528 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 355 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00384 Pumo-Chr9 6128072 6132913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00384 44 528 Miscellaneous Gene Families AT1G58440 80.000 0.0 808
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00384 K00511 - gmx:100804406 977.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00384 9 6128072 6132913 Pumo9g00384 9 6128072 6132913 ECH
Pumo9g00384 9 6128072 6132913 Pumo10g00294 10 3968375 3971934 PCT