Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00294 ATGGTGGACCCCTACGTGCTCGGATGGATCATCTGCGCCGTGCTCAGCCTCGTCACGCTTCGCAATTTCGCTCGGAAGAACCGTTGCGCTTCGTCGGAGACGGGTGCCACTCGCTGCGCGGAAAACATTACCACCGCTGCCGGAGAATGCAGATCCTTGAACCGCGACGGCGACGTTGACGTCATCATTGTCGGAGCTGGCGTCGCTGGCTCCGCTCTCGCTCACACTCTCGGCAAGGATGGGCGTCGAGTACTTGTCATCGAAAGAGATCTGAGTGAACCAGACCGAATTGTTGGAGAGTTGCTACAACCTGGAGGTTATCTCAAATTAATTGAGCTGGGACTTGAAGATTGTGTAGAGAAAATTGATGCTCAGCAAGTGTTTGGTTATGCTCTTTTCAAGGATGGGAAACACACACGACTCTCTTATCCGTTGGAAAAGTTTCACTCAGATGTTGCTGGCAGAAGCTTTCACAATGGGCGTTTTATTCAGAGGATGAGAGAGAAGGCTGCCTCCCTTCCCAATGTACGACTGGAGCAAGGAACAGTTACTTCCCTACTTGAAGAGAAGGGGGTTATTAAAGGTGTGCACTACAAAACGAAAGATAGTCAAGAATTATCAGCTTGTGCGCCTCTTACCATTGTTTGTGATGGCTGTTTCTCAAACTTGCGCCGTTCTCTCTGTAATCCTACGGTAGATGTTCCCTCTTATTTCGTTGGCTTAGTTTTGGAGAATTGTGAACTTCCTTGTGCAAATCATGGCCATGTCATACTGGGAGATCCCTCGCCAGTTCTGTTCTATCGTATAAGTAGTTCAGAAATCCGCTGTCTGGTTGATGTTCCTGGTCAGAAGGTTCCATCTATTGCCAATGGTGAAATGGCAAATTATTTGAAGACAGTGGTAGCTCCACAGGTACCCCATATATGCCAGAGGTTCTACATGTTCCTTTTAAACCTTGGCATGTGA 966 0.4824 MVDPYVLGWIICAVLSLVTLRNFARKNRCASSETGATRCAENITTAAGECRSLNRDGDVDVIIVGAGVAGSALAHTLGKDGRRVLVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEKIDAQQVFGYALFKDGKHTRLSYPLEKFHSDVAGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEEKGVIKGVHYKTKDSQELSACAPLTIVCDGCFSNLRRSLCNPTVDVPSYFVGLVLENCELPCANHGHVILGDPSPVLFYRISSSEIRCLVDVPGQKVPSIANGEMANYLKTVVAPQVPHICQRFYMFLLNLGM 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00294 321 Gene3D - 55 260 IPR036188 -
Pumo10g00294 321 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 209 224 - -
Pumo10g00294 321 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 60 82 - -
Pumo10g00294 321 SUPERFAMILY FAD/NAD(P)-binding domain 58 230 IPR036188 -
Pumo10g00294 321 PANTHER SQUALENE MONOOXYGENASE 9 307 IPR040125 GO:0004506|GO:0016126
Pumo10g00294 321 Pfam NAD(P)-binding Rossmann-like domain 63 89 - -
Pumo10g00294 321 Pfam Squalene epoxidase 210 310 IPR013698 GO:0004506|GO:0016020|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00294 Pumo-Chr10 3968375 3971934 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00294 41 307 Miscellaneous Gene Families AT1G58440 78.439 6.03e-152 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00294 K00511 - gmx:100820031 558.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00294 10 3968375 3971934 Pumo10g00294 10 3968375 3971934 ECH
Pumo9g00384 9 6128072 6132913 Pumo10g00294 10 3968375 3971934 PCT