Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02608 ATGAAGGTTTGGAGATGGTTGGTGAGTTTGTTGTTTGTGGGGTTAGTGTTGCTGCCTGTGTCAATAATGGGTCGATTCGTGGTGGAGAAGAACAGCCTGAGAGTGACATCACCGGACAAAATAAGGGGCACACACGATAGTGCCATTGGCAACTTCGGAATACCTCAATACGGTGGTAGCATGGCTGGGAACGTCGTTTACCCTAAGGATAACAAAAAGGGTTGCAAAGAGTTTGACGACTCTGGGATTTCTTTCAAATCAACCCCCGGTGCTCTTCCCACCATTGTTCTACTCGATCGCGGAAGTTGCTTCTTTGCTTTGAAGGTCTGGAATGCCCAGAAGGCTGGAGCTTCTGCGGTTCTTGTTGCAGATGATGTTGAGGAGCCCTTAATAACTATGGACACGCCTGAAGAGGATGGCTCATCTGCCAAATATGTGGAGAACATAACTATACCCTCTGCTCTCGTTGGAAAAAGTTTTGGTGAAAAATTAAAGGATGCCATAAGTGGTGGGGACATGGTCAATGTAAACCTTGATTGGAGAGAGGCTGTGCCTCACCCAGATGATCGCGTGGAGTATGAGTTGTGGACTAACAGCAATGATGAGTGTGGAGTTAAGTGTGATATGTTGATGGAATTTGTGAAGGATTTCAAGGGTGCAGCACAGATACTAGAGAAAGGCGGTTACACTCAGTTTACACCCCATTATATAACTTGGTACTGTCCTCATGCATTCACATTGAGCAAACAGTGCAAGTCTCAATGCATAAATCATGGAAGATATTGCGCTCCAGATCCGGAGCAAGACTTCACCACTGGTTATGATGGGAAAGATGTGGTTATTGAAAATTTAAGGCAGCTATGTGTTTTTAAGGTGGCAAACGAAACTGAAAAGCCTTGGGTGTGGTGGGACTATGTCACTGATTTTCAAATTAGATGCCCCATGAAGGAGAAGAAGTACAATAAGGATTGTGCAAATGCTGTAATTAAATCACTGGGTCTTAATATTGAAAAGATTGAAAAGTGCATGGGAGATCCAGATGCCGATACTGATAATCCTGTTTTGAAAGAAGAGCAAGATGCCCAAATTGGAAAGGGATCGCGAGGTGATGTTACCATATTGCCTACTCTTGTGGTCAATAATCGACAATATCGAGGAAAATTGGAGAAAGGTGCTGTTCTAAAGGCTATATGTTCTGGGTTTGAGGAAACTACTGATCCAGCTGTTTGCTTGAGCAGTGATGTGGAGACAAATGAGTGCTTGACAAACAATGGTGGTTGTTGGCGGGATAAAGCAGCTAACATCACTGCATGCAAGGATACATTCCGTGGGAGAGTATGTGAATGCCCTCTGGTTGATGGTGTACAATTCAAAGGAGATGGTTATACAACATGTGAAGCAAGTGGACTTGGGCGTTGCAAGATAAACAATGGAGGCTGTTGGCATGATGCCCAGAATGGACATGCTTTTTCTGCTTGTTTGGATATTGGAGGGGTCAAATGCCAGTGTCCCACAGGGTTTAGAGGTGATGGTGTCAAAAATTGTGAAGATATTGATGAATGCAAAGAGAAGAAGGCTTGTCAGTGCCCTGAATGTAGCTGCAAGAATATGTGGGGAAGCTACGACTGCAGTTGTAGTGGAGATCTTCTGTATATGAGGGACCATGATACCTGCATAAGTGAGTTGAATATGCAAGACTTTTTACTTGCTCCTACATGTGCATATGTTTGTTTTGTTATAAGGCTTGTTTTCATGCCCTCTACTGGATTACGTACAGGTAAAACTGGCAGTCAGGGAAGATCTACTTGGGCTGCTTTTTGGTTGATTTTACTTGGCGTAGTTATGATCGCTGGTGGGGCATTCCTTGTGTACAAGTATAGAATAAGGGTAAGCTCTGCTGCTTTTTCTCATTTTGGTGTTGTTATTGGATGCTTAATGCTGAAATTCTGTAGAGCATTAGAGCGTGCTGAGTTGCCCAACATTCCAAGCTTGTATAACTAA 2001 0.4353 MKVWRWLVSLLFVGLVLLPVSIMGRFVVEKNSLRVTSPDKIRGTHDSAIGNFGIPQYGGSMAGNVVYPKDNKKGCKEFDDSGISFKSTPGALPTIVLLDRGSCFFALKVWNAQKAGASAVLVADDVEEPLITMDTPEEDGSSAKYVENITIPSALVGKSFGEKLKDAISGGDMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGYTQFTPHYITWYCPHAFTLSKQCKSQCINHGRYCAPDPEQDFTTGYDGKDVVIENLRQLCVFKVANETEKPWVWWDYVTDFQIRCPMKEKKYNKDCANAVIKSLGLNIEKIEKCMGDPDADTDNPVLKEEQDAQIGKGSRGDVTILPTLVVNNRQYRGKLEKGAVLKAICSGFEETTDPAVCLSSDVETNECLTNNGGCWRDKAANITACKDTFRGRVCECPLVDGVQFKGDGYTTCEASGLGRCKINNGGCWHDAQNGHAFSACLDIGGVKCQCPTGFRGDGVKNCEDIDECKEKKACQCPECSCKNMWGSYDCSCSGDLLYMRDHDTCISELNMQDFLLAPTCAYVCFVIRLVFMPSTGLRTGKTGSQGRSTWAAFWLILLGVVMIAGGAFLVYKYRIRVSSAAFSHFGVVIGCLMLKFCRALERAELPNIPSLYN 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02608 666 Pfam Complement Clr-like EGF-like 500 520 IPR026823 -
Pumo8g02608 666 Gene3D Laminin 471 553 - -
Pumo8g02608 666 Gene3D Laminin 410 466 - -
Pumo8g02608 666 CDD EGF_CA 517 545 - -
Pumo8g02608 666 FunFam vacuolar-sorting receptor 1 410 466 - -
Pumo8g02608 666 SUPERFAMILY PA domain 94 170 IPR046450 -
Pumo8g02608 666 ProSitePatterns Calcium-binding EGF-like domain signature. 517 543 IPR018097 GO:0005509
Pumo8g02608 666 FunFam Vacuolar-sorting receptor 1 23 187 - -
Pumo8g02608 666 Pfam PA domain 62 164 IPR003137 -
Pumo8g02608 666 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 10 629 - -
Pumo8g02608 666 CDD PA_VSR 51 178 - -
Pumo8g02608 666 Gene3D - 23 187 - -
Pumo8g02608 666 ProSitePatterns EGF-like domain signature 2. 501 515 IPR000742 -
Pumo8g02608 666 SMART egfca_6 517 559 IPR001881 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02608 Pumo-Chr8 63284225 63287840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02608 24 660 Miscellaneous Gene Families AT2G14740 76.609 0.0 1024
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02608 - - gmx:100820115 1203.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02608 8 63284225 63287840 Pumo8g02608 8 63284225 63287840 ECH
Pumo8g02608 8 63284225 63287840 Pumo3g00677 3 10060433 10066393 PCT