Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00677 ATGAAGCTTCGGAGATCTTCGCTGTGCGTCTTTCTAGGGTTTCTGGTGCTGTTCCTCTCGCCGCCGTCAATGGCGAAATTCGTGGTGGAGAAGAACAGCTTGACGGTGACGTCGCCGGACAACATCAAGGGCACGCACGATAGCGCGATTGGCAACTTCGGGATACCCCAATACGGAGGTAGCATGGCTGGGAACGTGTTGTACCCTAAGGAAAACAAAAAGGGTTGCAAGGAGTTCGATGAGTATGGGATTTCCTTCAAATCCAAACCCGGTGCTCTTCCCACTATCGTTTTGCTCGATCGAGGAAATTGCTTCTTTGCTTTGAAGGTATGGAATGCACAGAAGGCTGGAGCTCATGCTGTTCTTGTTGCGGATGATATTGAGGAAAAGTTGATAACCATGGACACTCCTGAGGAGGATGGGTCGTCTGCAAAATACATAGAGAACATAACAATACCATCTGCTCTCATTGAGAAAAGTTTTGGTGTAAAGTTGAAGGATGCCATAAGTAATGGGGATATGGTCAACGTAAATCTTGATTGGAGAGAGGCTGTCCCCCACCCAGACGACCGTGTGGAGTATGAATTGTGGACCAACAGCAATGATGAGTGTGGAGTTAAATGTGATATGTTGATGGAATTTGTGAAAGATTTTAAGGGTGCGGCACAGATATTGGAGAAAGGTGGTTATACTCAATTTACACCCCATTATATAACTTGGTACTGTCCTCAGGCATTCACATTGAGCAAACAGTGCAAGTCCCAGTGCATAAATCATGGAAGATATTGCGCTCCGGATCCTGAGCAAGATTTCAGCACTGGTTATGATGGGAAAGATGTGGTTATTGAAAATTTAAGGCAGCTATGTGTTTTCAAGGTGGCAAATGAAACCAAAAAGCCTTGGGTGTGGTGGGACTATGTCACTGATTTTCAAATTAGATGCCCAATGAAGGAGAAAAAGTATAACAAGAAATGTGCAGATGCTGTCATTGAATCACTTGGCCTTGATATTAAAAAGATTGAAAGGTGCATGGGAGATCCAAATGCTGATTCTGAAAATCCTGTTTTGAAAGAAGAGCAAGATGCCCAAGTTGGGAAGGGGTCACGAGGTGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAATATCGAGGAAAATTAGAGAAAGGTGCTGTTATGAAAGCTATTTGTGCTGGTTTTGAAGAAACTACCGAACCAGCTGTTTGTTTGAGCAGTGATGTGGAGACAAATGAGTGTTTGGAGAATAATGGTGGTTGTTGGCAGGATAAAACAGCTAACATCACTGCATGCAAGGATACGTTCCGTGGGAGAGTATGCGAATGCCCCTTGGTGGATGGTGTGCAGTTTAAAGGAGATGGTTATACAACATGTGCAGCTAGTGGACCTGGGCGTTGCAAGATAAACAATGGAGGTTGTTGGCATGAAGCTCGGAATGGACATGCATATTCTGCTTGTTCGGATGATGGAGGGGTTAAATGCCAGTGTCCTGCAGGCTTTAAAGGTGATGGTGTCAAAAATTGTGAAGACATTAATGAATGCAAAGAGAAGAAAGCTTGTCAGTGCCCTGAATGTAGCTGCAAGAATACTTGGGGAAGCTATGACTGCACTTGTAGCGGGGATCTTTTGTATATAAGGGACCACGATACTTGCATAAGTAAAACTGCGAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTATTTTAGCTGGCTTAGTTGTGGCTGCTGCAGGGGCATACCTTGTGTACAAATATAGAATAAGGTCATATATGGATTCTGAAATCAGAGCCATCATGGCACAGTATATGCCCTTGGACAGCCAAGGAGAAGTTGTAAATCACGCGAACGAAGAAAGAGCGTGA 1893 0.4422 MKLRRSSLCVFLGFLVLFLSPPSMAKFVVEKNSLTVTSPDNIKGTHDSAIGNFGIPQYGGSMAGNVLYPKENKKGCKEFDEYGISFKSKPGALPTIVLLDRGNCFFALKVWNAQKAGAHAVLVADDIEEKLITMDTPEEDGSSAKYIENITIPSALIEKSFGVKLKDAISNGDMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGYTQFTPHYITWYCPQAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVIENLRQLCVFKVANETKKPWVWWDYVTDFQIRCPMKEKKYNKKCADAVIESLGLDIKKIERCMGDPNADSENPVLKEEQDAQVGKGSRGDVTILPTLVVNNRQYRGKLEKGAVMKAICAGFEETTEPAVCLSSDVETNECLENNGGCWQDKTANITACKDTFRGRVCECPLVDGVQFKGDGYTTCAASGPGRCKINNGGCWHEARNGHAYSACSDDGGVKCQCPAGFKGDGVKNCEDINECKEKKACQCPECSCKNTWGSYDCTCSGDLLYIRDHDTCISKTASQEGRSAWAAFWVILAGLVVAAAGAYLVYKYRIRSYMDSEIRAIMAQYMPLDSQGEVVNHANEERA 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00677 630 CDD EGF_CA 518 546 - -
Pumo3g00677 630 ProSitePatterns Calcium-binding EGF-like domain signature. 518 544 IPR018097 GO:0005509
Pumo3g00677 630 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 1 620 - -
Pumo3g00677 630 FunFam vacuolar-sorting receptor 1 411 467 - -
Pumo3g00677 630 Pfam Complement Clr-like EGF-like 501 521 IPR026823 -
Pumo3g00677 630 FunFam Vacuolar-sorting receptor 1 24 188 - -
Pumo3g00677 630 CDD PA_VSR 52 179 - -
Pumo3g00677 630 SMART egfca_6 518 560 IPR001881 GO:0005509
Pumo3g00677 630 ProSitePatterns EGF-like domain signature 2. 502 516 IPR000742 -
Pumo3g00677 630 MobiDBLite consensus disorder prediction 349 368 - -
Pumo3g00677 630 MobiDBLite consensus disorder prediction 349 365 - -
Pumo3g00677 630 Gene3D - 24 188 - -
Pumo3g00677 630 Pfam PA domain 64 164 IPR003137 -
Pumo3g00677 630 Gene3D Laminin 472 552 - -
Pumo3g00677 630 Gene3D Laminin 411 466 - -
Pumo3g00677 630 SUPERFAMILY PA domain 34 144 IPR046450 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00677 Pumo-Chr3 10060433 10066393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00677 25 630 Miscellaneous Gene Families AT2G14740 84.158 0.0 1093
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00677 - - gmx:100803958 1267.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00677 3 10060433 10066393 Pumo3g00677 3 10060433 10066393 ECH
Pumo8g02608 8 63284225 63287840 Pumo3g00677 3 10060433 10066393 PCT