Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02408 ATGGCATCGCGCGTCAGCATTGGCAACCTTACCTCCTCCGCGCCGTATATTAATTCCCCTCACTTTCGCTCACCACTTAAGGTTTCCAATAACCCCTCTTTGCAAAACGGTTCGCATAAGGTACTCATGCGCGAGAAGACTGTCCTGGTAACCGGCGGAGCCGGTTACATCGGCAGCCACACTGTTCTTCAGCTCTTGCTCGGAGGTTTCAGAACCGTTGTCGTCGACAACCTCGACAATTCCTCCGAGGTTGCCATCCACAGAGTCAGGGAACTCGCCGGCGAATTTGGGAATAACCTCTCCTTTCACAAGGTGGACCTACGGGACAGAGATGCACTAGAGCAAATTTTTGTTTCCACACAGTTTGATGCTGTCATACATTTTGCTGGACTGAAAGCAGTAGGGGAAAGTGTGCAAAAACCTTTACTATACTATAACAACAACTTGACTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAGCTTGTGTTCTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCATGCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACCAAGCTTATCATTGAAGAAATTTGTCGTGATGTCCAATGTGCAGAGCCTGATTGGAAAATAATATTGTTAAGATACTTCAATCCAGTTGGTGCACACCCTAGTGGTTATATTGGGGAGGATCCTCGTGGAATTCCAAACAATCTCATGCCATTTGTTCAGCAAGTAGCAGTTAGCAGACGGCCTGCACTGACAGTTTTTGGAAATGATTATAATACAATTGATGGCACTGGGGTTCGCGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCATTGCTTAAACTAGACGAACCTAATATAGGTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTTAGAGCTTTTGAAATGGCATCTGGAAAGAAAATTCCACTTGTGATGGCTGGCCGTAGACCCGGTGATGCTGAAATTGTTTATGCATCAACAAAGAAAGCGGAAAGAGAGCTTAAATGGAAGGCAAAATATGGCATTGATGAGATGTGCCGTGATCAATGGAATTGGGCTAGCAAAAACCCATATGGCTATGGAGATCAGGACTCCACCGAATAA 1176 0.4541 MASRVSIGNLTSSAPYINSPHFRSPLKVSNNPSLQNGSHKVLMREKTVLVTGGAGYIGSHTVLQLLLGGFRTVVVDNLDNSSEVAIHRVRELAGEFGNNLSFHKVDLRDRDALEQIFVSTQFDAVIHFAGLKAVGESVQKPLLYYNNNLTGTITLLEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAMNPYGRTKLIIEEICRDVQCAEPDWKIILLRYFNPVGAHPSGYIGEDPRGIPNNLMPFVQQVAVSRRPALTVFGNDYNTIDGTGVRDYIHVVDLADGHIAALLKLDEPNIGCEVYNLGTGKGTSVLEMVRAFEMASGKKIPLVMAGRRPGDAEIVYASTKKAERELKWKAKYGIDEMCRDQWNWASKNPYGYGDQDSTE 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02408 391 PRINTS Nucleotide sugar epimerase signature 343 360 - -
Pumo8g02408 391 PRINTS Nucleotide sugar epimerase signature 74 90 - -
Pumo8g02408 391 PRINTS Nucleotide sugar epimerase signature 304 319 - -
Pumo8g02408 391 PRINTS Nucleotide sugar epimerase signature 278 293 - -
Pumo8g02408 391 CDD UDP_G4E_1_SDR_e 47 376 IPR005886 GO:0003978|GO:0006012
Pumo8g02408 391 Gene3D - 48 317 - -
Pumo8g02408 391 Gene3D - 236 377 - -
Pumo8g02408 391 PANTHER UDP-GLUCOSE 4-EPIMERASE 44 387 - -
Pumo8g02408 391 FunFam UDP-glucose 4-epimerase 48 240 - -
Pumo8g02408 391 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 384 IPR036291 -
Pumo8g02408 391 FunFam UDP-glucose 4-epimerase 4 320 388 - -
Pumo8g02408 391 Pfam GDP-mannose 4,6 dehydratase 49 372 IPR016040 -
Pumo8g02408 391 NCBIfam UDP-glucose 4-epimerase GalE 48 382 IPR005886 GO:0003978|GO:0006012
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02408 Pumo-Chr8 61330220 61334959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02408 44 361 Miscellaneous Gene Families AT4G00110 26.866 3.02e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02408 K01784 - gmx:100818509 766.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02408 8 61330220 61334959 Pumo8g02408 8 61330220 61334959 ECH
Pumo8g02408 8 61330220 61334959 Pumo6g00407 6 5171036 5175210 PCT