Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02385 ATGAAGCCCGACCCTTACACCGTTATCTTGAATTCATTTCATTTCATGATTCTATTGGCATTAGCCAATACTACTAGTCTGTGTGGGTGTTTCTATTGTAAGAACAGAACAGAACAAAACTGCTTCTACCTTTATTTTTCTTCTTCCTTCCTTCCTCTCTGTATTGTATACTTTGGTTTGGTACCACCGACTTTACCTTACACAACAGAATCAATCGCCTTTATCATGGATGAAGAATTGGTTGATGAGGCAACCCAATTAGAGGTTGCTGAGGATTCACAGCGCCAGAACAAAGATTCACCCAACATGGAATGCCGAAAAATCTTAAAATCCCAAGAAGCCTTTATCCCTGTTAAGCAGGACTACTCGCAGATACCACCTCGGGAATATGATGGCATTCCACAAGGTAAAAATGTTGTTGAAGGTATCGACCATGCAGATACATCACAGCATCCTCGTGTAAGCCTTTTTATGGATGATGCTGATGTTATGGTTGAAGAATTAACAGTAAAAAGTTACAATGGCTCAAGCTTGGATATTGGTACATCAAACAACCGAGAGCAGATGTATAATCGGCAGAACCATTGGCAGAATCTTTATCAGCTAGCAAGTAATTCAGGAATTGGAAATTCACTAAGTGATATTGGAACCAGAAACAGTGTCCAGGCTACATCTAGTGCTCGGGAGGATATTGGATCCTCATCTTTCCCAGACATGCTTGCTAGAAAATCTCTCAGTGATGGCCAGAGCAATGTCATGGAACACTTGGCAGCTGCTGAAAATAAAGAGGGTGCAGGTGATGTTCGTCAAGGAATACGGACCAAAATTATATCCCAGTCAGGATTTGCTGAGTTTTTCATAAAAAATACGCTGAAGGGTAAGGGTATTGTATATAAAGGTCCATCTTATGATGCCTTCTGTGCTCAGTCTAGAGAGCAAAACCGGATGAAGACTGGCATTGATACAGATCAGAATCAGATGAGGACCGGCATTGGCACAGACCAGAATCAGATGAGGACTGGCATTTGTACCGATCAGAATCAGATGAAGACTGGCATTGGCACAGATCAGAATCAGATGAAGACTAGCATTGGCACAGATCAGAATCAGATGAAGACTGGCATTGGCACAGATCAGAATCAGATGAAGAATGGCATTGGTACTGATCAGAAACAGATGAAAACTGGTATTGGTACTCACTTGAACTCTAATCAATCAGTGGGCTATGGTTCCAAGACTGCAAAGGTTCCAAAACTGCCTAGATCTGGCAGGTCTGATTGTGATGGTGCGACTTTGAGAGAATGGTTGAAGCATGGGCACCACAAAGCAAGCAAAGTGGAAAGTTTGAATATATTTAGGAAGATTGTGGATTTGGTGGACAACTCTCACTCTCAGGGAGTTGCATTGCATAACCTATCTCCATCTTATATTAAATTGACGCCATCAAACAAGGTCATGTACCTTGGTTTACCTGTTCAAAAACAGATGGTGGATAATGTTGTAAATTCTGAAGTTGTTCACTTTGATAATTCTTTTATTAGAAAAAGGCTGTCAGAGCAAGTATCATTTCCCTCTCTTGATATGGGGTCAAAGAAACAAAAATTTAATGAGAATTTGAGAGTTACTGGTGGTGACTTGTGTCTTGAAACTGCAAGTGATAGGAAACTTCATAGTCATACAGTTGGTTCACAAGATTATTACAATGAATATGAGGAAGATACCCAATTTTCTAAATATAACATTGGAAGAATGTCTAGCATCCCTCATGTATCTAATGCAGGTCAAATGCCATTGACTTCATGTGAAAAATTGGAAAATAAATGGTACTCAAGTCCCGAGGGAGGTTACACAACATCAACAAATATCTACTGTCTTGGTGTCCTTCTTTTCGAGTTACTTGGTCATTTTGACTCTGAAAGAACACATATTGCAGCAATGTCTGATCTTCGTCATAGGATTCTTCCTCCAATTTTCCTATCAGAAAATCCTAAGGAAGCTGGCTTTTGTCTTTGGCTGTTGCATCCTGAACCATCATCACGTCCAACAACAAGGGAAATCCTTCAATCTGAATTGATTAATGGATTGCAAGAATTGTTTAGTGAGGAAATGTCATCAAGTATTGACCAAGAAGATGCAGAATCAGAATTGTTATTGCATTTCCTCGTTTTGTTAAAAGAGCAGAAGCAGAACAATGCCTTCAAACTGGTAGAAGAAATCAAGTGCTTGGAATCAGATATAGAAGAGGTGGAGAGGAGGCACGACTCAAGAAAATCCTTGGTTTCCTCTGGCTTGCAGAATGATTACTCTTGTCAGAAAGAGATGATGCCTCTTAAAAAGGAATCTTTGAGTTTAGAAATGCTGCCCTCGATATCCCCAATCTCTAATTCAAATGAAGTGAGATTGATGAGAAATATATGCCATCTTGAAAGTGCTTATTTTTCCATGAGATCCAAACTTCAGCTTTCTGAAACAGATGCTTCAACTCACCCTGATAAAGATATACTAAGAAATCGTGAGAACTGGTATGTGGCCCAAAAAAGCGAAGAACAACCTAAAAGGAAAGATACTTTAGGGGCATTCTTTGATGGTTTGTGCAAGTATGCACATTATTGCAAGTTTGAAGTGCGGGGTGTACTAAGAAACGCCGATTTTAACAATCCTGCAAACGTAATTTGCTCTCTAAGCTTTGATCGGGATGCAGATTACTTTGCTTCCGCTGGGATATCTAAGAAAATAAAAATTTTTGAGTTTAGTGCACTATGCAACGACTCTGTTGATATCCATTATCCTGCGGTTGAGATGTCAAACAGATCAAAACTCAGCTGTGTTTGCTGGAATAACTATATAAAGAACTATCTTGCTTCTACAGATTATGACGGTATAGTGAAGTTATGGGATGCTAGTACAGGTCAAGAATTTTCTCAATTCACTGAACATGAGAAGAGGGCTTGGTCTGTTGACTTCTCTGTAGTATGCCCTACAAAATTTGCCAGTGGAAGTGATGATTGTACTGTCAAGCTGTGGAGCATCAGCGAGAGGAACTGTTTAGGCACAATCAGGAATGTTGCTAATGTCTGTTGTGTTCAATTCTCTGCTCATTCCTCCCATTTGCTGGCCTTTGGATCTGCGGATTACTCAACATATTGTTATGATCTTCGCAATCTTAGAAGTCCCTGGTGTGTATTGGCTGGCCATCGTAAGGCTGTGAGCTATGTCAAATTCTTGGACTCTGAAACACTTGTGTCTGCTTCTACTGATAATACATTGAAGATCTGGGATCTGAATAAAACCTCTCCTGTGGGTGCATCCATTAATGCTTGCAGCCTAACCCTGTCAGGACATACTAATGAGAAGAATTTTGTGGGTCTGTCAGTGGCTGACGGATATATTGCATGTGGATCAGAAACAAATGAGGTTTACACTTACTATAGATCGCTTCCCATGCCAATCACTTCACACAAATTTGGGTCCATTGATCCCATTTCTGGTAAAGACACTGATGATGACAATGGTCAGTTTGTTTCAAGTGTGTGCTGGAGAGGGAAATCAGACATGCTTATTGCGGCCAATTCAAGTGGACGTGTAAAAGTGTTACAGATGGTTTAA 3606 0.4016 MKPDPYTVILNSFHFMILLALANTTSLCGCFYCKNRTEQNCFYLYFSSSFLPLCIVYFGLVPPTLPYTTESIAFIMDEELVDEATQLEVAEDSQRQNKDSPNMECRKILKSQEAFIPVKQDYSQIPPREYDGIPQGKNVVEGIDHADTSQHPRVSLFMDDADVMVEELTVKSYNGSSLDIGTSNNREQMYNRQNHWQNLYQLASNSGIGNSLSDIGTRNSVQATSSAREDIGSSSFPDMLARKSLSDGQSNVMEHLAAAENKEGAGDVRQGIRTKIISQSGFAEFFIKNTLKGKGIVYKGPSYDAFCAQSREQNRMKTGIDTDQNQMRTGIGTDQNQMRTGICTDQNQMKTGIGTDQNQMKTSIGTDQNQMKTGIGTDQNQMKNGIGTDQKQMKTGIGTHLNSNQSVGYGSKTAKVPKLPRSGRSDCDGATLREWLKHGHHKASKVESLNIFRKIVDLVDNSHSQGVALHNLSPSYIKLTPSNKVMYLGLPVQKQMVDNVVNSEVVHFDNSFIRKRLSEQVSFPSLDMGSKKQKFNENLRVTGGDLCLETASDRKLHSHTVGSQDYYNEYEEDTQFSKYNIGRMSSIPHVSNAGQMPLTSCEKLENKWYSSPEGGYTTSTNIYCLGVLLFELLGHFDSERTHIAAMSDLRHRILPPIFLSENPKEAGFCLWLLHPEPSSRPTTREILQSELINGLQELFSEEMSSSIDQEDAESELLLHFLVLLKEQKQNNAFKLVEEIKCLESDIEEVERRHDSRKSLVSSGLQNDYSCQKEMMPLKKESLSLEMLPSISPISNSNEVRLMRNICHLESAYFSMRSKLQLSETDASTHPDKDILRNRENWYVAQKSEEQPKRKDTLGAFFDGLCKYAHYCKFEVRGVLRNADFNNPANVICSLSFDRDADYFASAGISKKIKIFEFSALCNDSVDIHYPAVEMSNRSKLSCVCWNNYIKNYLASTDYDGIVKLWDASTGQEFSQFTEHEKRAWSVDFSVVCPTKFASGSDDCTVKLWSISERNCLGTIRNVANVCCVQFSAHSSHLLAFGSADYSTYCYDLRNLRSPWCVLAGHRKAVSYVKFLDSETLVSASTDNTLKIWDLNKTSPVGASINACSLTLSGHTNEKNFVGLSVADGYIACGSETNEVYTYYRSLPMPITSHKFGSIDPISGKDTDDDNGQFVSSVCWRGKSDMLIAANSSGRVKVLQMV 1201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02385 1201 PRINTS G protein beta WD-40 repeat signature 1080 1094 IPR020472 -
Pumo8g02385 1201 PRINTS G protein beta WD-40 repeat signature 996 1010 IPR020472 -
Pumo8g02385 1201 PRINTS G protein beta WD-40 repeat signature 953 967 IPR020472 -
Pumo8g02385 1201 Gene3D Transferase(Phosphotransferase) domain 1 427 702 - -
Pumo8g02385 1201 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 859 1201 - -
Pumo8g02385 1201 ProSitePatterns Trp-Asp (WD) repeats signature. 953 967 IPR019775 -
Pumo8g02385 1201 ProSiteProfiles Trp-Asp (WD) repeats profile. 1062 1102 IPR001680 GO:0005515
Pumo8g02385 1201 ProSitePatterns Trp-Asp (WD) repeats signature. 1080 1094 IPR019775 -
Pumo8g02385 1201 Gene3D - 861 1201 IPR015943 GO:0005515
Pumo8g02385 1201 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1062 1095 - -
Pumo8g02385 1201 PANTHER PROTEIN SPA1-RELATED 2 82 1201 IPR044630 GO:0009640
Pumo8g02385 1201 SUPERFAMILY WD40 repeat-like 885 1198 IPR036322 GO:0005515
Pumo8g02385 1201 SMART WD40_4 872 916 IPR001680 GO:0005515
Pumo8g02385 1201 SMART WD40_4 926 966 IPR001680 GO:0005515
Pumo8g02385 1201 SMART WD40_4 1055 1093 IPR001680 GO:0005515
Pumo8g02385 1201 SMART WD40_4 1012 1051 IPR001680 GO:0005515
Pumo8g02385 1201 SMART WD40_4 1160 1199 IPR001680 GO:0005515
Pumo8g02385 1201 SMART WD40_4 969 1009 IPR001680 GO:0005515
Pumo8g02385 1201 SMART WD40_4 1104 1143 IPR001680 GO:0005515
Pumo8g02385 1201 Pfam WD domain, G-beta repeat 1061 1093 IPR001680 GO:0005515
Pumo8g02385 1201 Pfam WD domain, G-beta repeat 971 1009 IPR001680 GO:0005515
Pumo8g02385 1201 ProSiteProfiles Trp-Asp (WD) repeats profile. 933 975 IPR001680 GO:0005515
Pumo8g02385 1201 Coils Coil 725 752 - -
Pumo8g02385 1201 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Pumo8g02385 1201 SUPERFAMILY Protein kinase-like (PK-like) 427 698 IPR011009 -
Pumo8g02385 1201 MobiDBLite consensus disorder prediction 400 425 - -
Pumo8g02385 1201 ProSiteProfiles Trp-Asp (WD) repeats profile. 976 1018 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02385 Pumo-Chr8 61063927 61071792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02385 996 1142 Miscellaneous Gene Families AT5G08390 29.530 1.37e-07 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02385 K16240 - gmx:100778303 2092.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02385 8 61063927 61071792 Pumo8g02385 8 61063927 61071792 ECH
Pumo8g02385 8 61063927 61071792 Pumo6g00430 6 5401671 5407264 PCT