Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00430 ATGGATTCTAATGCATTGCTGAGCTCCAGTTTAAAGACTGCAAAGTCTCCTCATAATGCTACAGGGCCAGGATCTGGTGGGTCTGACACTGATGGTGTGACTTTGAGAGAATGGTTGAAATCTAGGCACCACAAATGGAGCAAAACAGATCGTTTAAGTATATTTAGAAAAATTGTGGATTTGGTTGATGGTTCTCACTCTGAGGGAGTTGCAATGCACAGTCTGTACCCTTCTTTTATTAAATTGTTACCATCAAACCAGGTTATGTACCTTGGATTGCCTACTCAGAAACAGACATTAGATAGTGTTGCAAATTCTGAAGTTCTTCAGCTAGACAATTCTTTTATTAGAAAAAGGCTGTCAGAGAAGGTAATATCTCCCTCTCTTAATTTGCGGTCGAAGAAACAGAAATTCAATGAAAATGCTAGAGTTGCTGGTGATTGGAGTCAATGCCCTCCAAGGACTGACTTGTATCTTCAAATTGCCAATGATATTAAAGTCAATGCAGTGGGATCACAAGATCACTGCAATGAATACAAGGAAGATATCCAATTTTCTAAACATAATATTCAGAGAATGTCTCGCATCGCTCACATATCTAATGCAGGTCAATTGCAATTGACTTCTTTAAATGAAAGATTGGAAGATAAATGGTATGCAAGTCCTGAGGGTGGTTGCACAACATCATCAAATATCTACTGTCTGGGAGTCCTTTTTTTTGAGTTACTTAATCATTTTGACTCAGAAAGAGCACATATTGCTGCAATGTCCAATCTTCGTCATAGGATTCTTCCTTCAGTTTTCCTATCAGAGTATCCTATGGAAGCCGGATTTTGCCTTTGGATGCTGCATCCTGAACCATCATCACGTCCAACAATAAGGGAGATCCTACAATCTGAAGTGATTAATGGAATGGAGGAGGTGTACTGTGAGGAATTATCATCAAGTCTTAACCAAGATGATGCAGAATCTGAATTGCTATTGCATTTCCTCATCTCACTAAAAGAGCAGAAGCACGTGGATGCCAACAAATTGGCAGAAGAAATCAGATGCTTGGAATCAGATATAGAAGAGGTGGAGAGGAGACATGACTTGAGAAAATCCTTGCTTCCCTCAAGCTTGCAGAACGGCTTCTCTTGTCAAATAGAGAGTGTGTCTCTTCTCAAAGAATCTTCAAGTTCAGAAACATTACCACCAGTATCCACAATTTCTAATGCAAATGAACTGAGATTGATGAAAAATATATGCCTACTTGAAAGTGCTTACTTTTCCATGAGATCCAAAATTAAGCTTCCTGAAACAGATACTGCAACTCACCCAGATAAAGATATACTGAGAAATCGTGACAATTGGTGTGTAGCTCAAAAAGACATGGAACAACATAAAACGACCGATACTTTAGGAGCTTTCTTTGACGGTTTGTGCAAGTACGCACGTTATAGCAAGTTTGAAGTGCGGGGCATACTAAGAAATACTGATTTTAACAATCCTGCAAATGTAATATGCTCTCTGAGTTTTGATAGAGATGAAGACTACTTTGCTGCTGCTGGGATATCAAAGAAAATTAAAATTTTTGAGTTCAATGCACTTCTCAATGACTCCGTTGACATCCATTATCCTGTAGTTGAGATGTCAAACAGATCAAGGCTCAGTTGTGTTTGCTGGAATAACTACATCCAGAACTATCTTGCCTCCACAGATTATGATGGTGCAGTTAAGCTATGGGATGCAAATACAGGCCAAGGGTTTTCTCGATTCACCGAACATGAAAAGAGGGCTTGGTCTGTAGATTTCTCTCTGGTATGCCCTACTAAATTTGCCAGTGGGAGTGATGATTGTTCTGTGAAACTGTGGAGTATCAATGAGCCACAATCAGGAATGTTGCTAATGTCTGTTGTGTTCAGTTCTCTACTCATTCCTCTTCATTTGCTGGCCGTTGGATCTGCTGATTACTCAGCTTATTGCTATGATCTTCGCAATCTTAGAAGCCCTTGGTGTGTGTCGGCTGGCCATCGTAAAGCTGTAAGCTATGTCAAATTCTTGGACTCTGAAACACTTGTTTCTGCATCAACTGATAATACGTTGAAGATCTGGGATCTCAATAAAACCTCTCCTGTGGGTCCATCAACTAGTGCTTGCAGCTTAACCCTGTCAGGACATACTAATGAGAAGAATTTTGTGGGTTTATCAGTCGCCGATGGATATATAGCATGTGGTTCAGAAACAAATGAGGTTTATACCTACTATAAATCTCTGCCCATGCCGGTCACTTCGCACAGGTTTGGGTCCATTGATCCTATTTCTGGTAAAGAGACGGATGATGACAATGGTCAGTTTGTTTCAAGTGTGTGCTGGAGAGGGAAATCAGATATGGTTATTGCAGCCAATTCAAGTGGATGTATAAAAGTTCTACAGATGGTTTGA 2424 0.3998 MDSNALLSSSLKTAKSPHNATGPGSGGSDTDGVTLREWLKSRHHKWSKTDRLSIFRKIVDLVDGSHSEGVAMHSLYPSFIKLLPSNQVMYLGLPTQKQTLDSVANSEVLQLDNSFIRKRLSEKVISPSLNLRSKKQKFNENARVAGDWSQCPPRTDLYLQIANDIKVNAVGSQDHCNEYKEDIQFSKHNIQRMSRIAHISNAGQLQLTSLNERLEDKWYASPEGGCTTSSNIYCLGVLFFELLNHFDSERAHIAAMSNLRHRILPSVFLSEYPMEAGFCLWMLHPEPSSRPTIREILQSEVINGMEEVYCEELSSSLNQDDAESELLLHFLISLKEQKHVDANKLAEEIRCLESDIEEVERRHDLRKSLLPSSLQNGFSCQIESVSLLKESSSSETLPPVSTISNANELRLMKNICLLESAYFSMRSKIKLPETDTATHPDKDILRNRDNWCVAQKDMEQHKTTDTLGAFFDGLCKYARYSKFEVRGILRNTDFNNPANVICSLSFDRDEDYFAAAGISKKIKIFEFNALLNDSVDIHYPVVEMSNRSRLSCVCWNNYIQNYLASTDYDGAVKLWDANTGQGFSRFTEHEKRAWSVDFSLVCPTKFASGSDDCSVKLWSINEPQSGMLLMSVVFSSLLIPLHLLAVGSADYSAYCYDLRNLRSPWCVSAGHRKAVSYVKFLDSETLVSASTDNTLKIWDLNKTSPVGPSTSACSLTLSGHTNEKNFVGLSVADGYIACGSETNEVYTYYKSLPMPVTSHRFGSIDPISGKETDDDNGQFVSSVCWRGKSDMVIAANSSGCIKVLQMV 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00430 807 Gene3D - 470 807 IPR015943 GO:0005515
Pumo6g00430 807 PANTHER PROTEIN SPA1-RELATED 2 23 807 IPR044630 GO:0009640
Pumo6g00430 807 ProSitePatterns Trp-Asp (WD) repeats signature. 563 577 IPR019775 -
Pumo6g00430 807 ProSiteProfiles Trp-Asp (WD) repeats profile. 668 708 IPR001680 GO:0005515
Pumo6g00430 807 MobiDBLite consensus disorder prediction 1 32 - -
Pumo6g00430 807 ProSiteProfiles Trp-Asp (WD) repeats profile. 543 585 IPR001680 GO:0005515
Pumo6g00430 807 Coils Coil 342 362 - -
Pumo6g00430 807 PRINTS G protein beta WD-40 repeat signature 606 620 IPR020472 -
Pumo6g00430 807 PRINTS G protein beta WD-40 repeat signature 563 577 IPR020472 -
Pumo6g00430 807 PRINTS G protein beta WD-40 repeat signature 686 700 IPR020472 -
Pumo6g00430 807 SUPERFAMILY Protein kinase-like (PK-like) 206 310 IPR011009 -
Pumo6g00430 807 Pfam WD domain, G-beta repeat 670 699 IPR001680 GO:0005515
Pumo6g00430 807 Pfam WD domain, G-beta repeat 586 619 IPR001680 GO:0005515
Pumo6g00430 807 SUPERFAMILY WD40 repeat-like 494 804 IPR036322 GO:0005515
Pumo6g00430 807 ProSiteProfiles Trp-Asp (WD) repeats profile. 586 628 IPR001680 GO:0005515
Pumo6g00430 807 ProSitePatterns Trp-Asp (WD) repeats signature. 686 700 IPR019775 -
Pumo6g00430 807 MobiDBLite consensus disorder prediction 1 28 - -
Pumo6g00430 807 Gene3D Transferase(Phosphotransferase) domain 1 31 311 - -
Pumo6g00430 807 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 668 701 - -
Pumo6g00430 807 SMART WD40_4 482 526 IPR001680 GO:0005515
Pumo6g00430 807 SMART WD40_4 710 749 IPR001680 GO:0005515
Pumo6g00430 807 SMART WD40_4 537 576 IPR001680 GO:0005515
Pumo6g00430 807 SMART WD40_4 661 699 IPR001680 GO:0005515
Pumo6g00430 807 SMART WD40_4 766 805 IPR001680 GO:0005515
Pumo6g00430 807 SMART WD40_4 579 619 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00430 Pumo-Chr6 5401671 5407264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00430 606 748 Miscellaneous Gene Families AT5G08390 28.477 1.54e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00430 K16240 - gmx:100813452 1442.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02385 8 61063927 61071792 Pumo6g00430 6 5401671 5407264 PCT