LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo8g02348	ATGGAGCTAATGAGCGTGAACGAACCCCAATTACTGTCTAAGATTGCTACCGGCAAGGGACATGGTGAGAACTCCCCATACTTTGATGGATGGAAGGCTTATGAAGACAATCCCTTTCATCCCATTAAAAATCCTAATGGGGTTATTCAGATGGGTCTTGCAGAAAATCAGCTTGCTTCTGACTTGGTTCAAAATTGGTTAACGAATAATCCTTGGGCTTCCATTTGCACTCCTGAAGGAGTGCGTGATTTCAAGGCCATGGCTAACTTTCAAGACTATCATGGTCTGCCGGAATTCAGAAAAGCTGTGGCTAAATTCATGGCAAGAACGAGAGGAAATAGAGTCACGTTCGACCCTGACCGTATTGTTATGAGCGGTGGAGCAACTGGAGCACACGAGGTCACTGCCTTTTGTTTGGCAGACCCCGGCGATGCATTTTTGGTCCCCACACCTTATTATGCAGGATTCGACAGGGATTTGAGGTGGAGAACGGGCGTTGAACTTGTTCCAGTTAAATGTGAAAGCTCAAAGGATTTCAAGTTAACAAGGAAAGCGTTGCAAGACGCGTACGAGAAAGCCAAACGGGACAACATCAGAATAAAGGGCTTGCTAATTACCAATCCATCAAACCCATTGGGAACCATCATGGACCGAGAAACTCTAAGAACAGTGGTGAGTTTCATCAATGAAAAACACATCCACCTAGTAAGCGACGAAATATACGCCGGTACAGTTTTTTGCCACCCTGGTTTCACGAGCATCGCGGAGGTAATAGAGCAAGAGACAGACATAGAATGTGACCGTGACCTCGTCCACATTGTTTATAGTCTTTCAAAGGATATGGGGTTCCCTGGGTTTAGAGTTGGCATCATATACTCTTACAACGACGCAGTGGTCAATTGCGCTCGCAAAATGTCTAGCTTTGGATTAGTGTCCACACAGACCCAATATCTTATAGCTTCAATGCTTTCTGATGATGAGTTCGTGGAACGGTTCCTTCAAGAGAGTGCAAAAAGGCTAGCCAAAAGGTATGGGGTTTTTTGTAGGGGACTGGCCCAAGTTGGCATAAAGTGCTTGGCGAGCAACGCTGGTTTGTTTCTGTGGATGGATTTGCGTCGTCTTTTGAAGAAGCCAACGTTTGAGGCGGAAATGGAACTGTGGAAAGTGATCATTCACCAAGTTAAGATAAATATTTCTCCTGGGTCTTCTTTTCATTGTTCTGAGCCAGGGTGGTTCAGGGTTTGCTATGCAAACATGGATGATAGAGCCGTGCAAGTTTCTCTGGCAAGAATGCGCATCTTTGTGAATCAGAACACCGAATCCAAGAAATCTTGCAGCCACAGAAAGTTAATGCTAAGCTTCTCATCCAGAAAGTTGGATGACTACTTGCTGTCACCTCACTCCCCTTTTCCTCAATCACCTCTAGTTAAAGCCTCCACTTGA	1443	0.4518	MELMSVNEPQLLSKIATGKGHGENSPYFDGWKAYEDNPFHPIKNPNGVIQMGLAENQLASDLVQNWLTNNPWASICTPEGVRDFKAMANFQDYHGLPEFRKAVAKFMARTRGNRVTFDPDRIVMSGGATGAHEVTAFCLADPGDAFLVPTPYYAGFDRDLRWRTGVELVPVKCESSKDFKLTRKALQDAYEKAKRDNIRIKGLLITNPSNPLGTIMDRETLRTVVSFINEKHIHLVSDEIYAGTVFCHPGFTSIAEVIEQETDIECDRDLVHIVYSLSKDMGFPGFRVGIIYSYNDAVVNCARKMSSFGLVSTQTQYLIASMLSDDEFVERFLQESAKRLAKRYGVFCRGLAQVGIKCLASNAGLFLWMDLRRLLKKPTFEAEMELWKVIIHQVKINISPGSSFHCSEPGWFRVCYANMDDRAVQVSLARMRIFVNQNTESKKSCSHRKLMLSFSSRKLDDYLLSPHSPFPQSPLVKAST	480

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo8g02348	480	Pfam	Aminotransferase class I and II	49	426	IPR004839	GO:0009058\|GO:0030170
	Pumo8g02348	480	Gene3D	Aspartate Aminotransferase, domain 1	37	430	IPR015422	GO:0003824
	Pumo8g02348	480	ProSitePatterns	Aminotransferases class-I pyridoxal-phosphate attachment site.	276	289	IPR004838	GO:0003824\|GO:0009058\|GO:0030170
	Pumo8g02348	480	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	143	164	-	-
	Pumo8g02348	480	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	51	77	-	-
	Pumo8g02348	480	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	302	325	-	-
	Pumo8g02348	480	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	270	294	-	-
	Pumo8g02348	480	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	84	100	-	-
	Pumo8g02348	480	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	233	256	-	-
	Pumo8g02348	480	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	121	141	-	-
	Pumo8g02348	480	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	197	221	-	-
	Pumo8g02348	480	CDD	AAT_like	89	422	-	-
	Pumo8g02348	480	SUPERFAMILY	PLP-dependent transferases	21	435	IPR015424	-
	Pumo8g02348	480	Gene3D	-	71	325	IPR015421	GO:0003824
	Pumo8g02348	480	PANTHER	BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED	12	433	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo8g02348	Pumo-Chr8	60702694	60705755	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo8g02348	K20772		-	gmx:100793020	928.702

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo8g02348	8	60702694	60705755	Pumo8g02348	8	60702694	60705755	ECH
	Pumo8g02348	8	60702694	60705755	Pumo6g00461	6	5793560	5796763	PCT