Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00461 ATGGGGTCGATGGCTGTGGACCAAACTCAATTGTTGTCTAAGATGGTCTTCGGAGATGGACATGGTGAAGCATCCCCATACTTTGATGGATGGAAGGCTTATGATGAAAACCCCTTTCATCCCACAGAGAATCCTAACGGGGTTATCCAAATGGGTCTTGCAGAGAATCAGCTTACTTCTGATTTGGTTGAAGATTGGATACTGAATAACCCAGAGGCCTCTATTTGCACTCCGGAAGGAATAAATGATTTCAGGGCCATAGCTAACTTTCAAGATTATCATGGTCTACCCGAGTTCAGAAACGCTGTGGCTAAATTCATGGGTAGAACAAGAGGAAACAAAGTCACGTTTGACCCTGACCGTATTGTCATGAGCGGTGGAGCAACTGGAGCACACGAAGTCACTACCTTTTGTTTGGCAGATCCCGGTGACGCATTTTTGGTGCCCATTCCTTATTATCCAGGTTTTGACCGGGATTTGAGGTGGAGAACAGGAATTAAACTTGTTCCAGTTATGTGCGATAGCTCAAACAATTTCAAGTTGACAAAGCAAGCATTAGAAGATGCCTATGAGAAAGCCAAAGAGGATAACATCAGAGTAAAGGGTTTACTCATCACCAATCCATCAAACCCATTAGGCACAGTCATGGACAGAAACACTCTAAGAACCGTGGTGAGCTTCATCAATGAAAAGCGTATCCACCTTGTATCTGATGAAATATACTCTGCAACAGTTTTTAGCAACCCCAGTTTCATAAGCATTGCTGAGATATTAGAGGAAGACACAGACATCGAATGTGACCGCAACCTCGTTCACATTGTTTATAGTCTTTCAAAGGATATGGGGTTCCCTGGCTTTAGAGTTGGCATCATATACTCTTACAATGATGCTGTGGTCCAGTGTGCACGCAAAATGTCAAGCTTTGGATTGGTCTCAACACAGACTCAGCATCTTTTAGCATCAATGCTAAACGATGATGAGTTTGTGGAGAAGTTTCTGGCAGAGAGTGCAAAGAGGTTGGCACAAAGGTATAGAGTTTTCACTGGGGGGTTGGCCAAGGTTGGCATAAAGTGCTTGCAAAGCAATGCTGGTCTCTTTGTGTGGATGGATTTGAGGCAACTTCTCAAGAAGCCAACTCTCGACTCTGAAATGGAGCTTTGGAAAGTGATCATTCATGAAGTTAAGATCAATGTTTCACCTGGCTCTTCTTTCCATTGCACTGAGCCAGGGTGGTTTAGGGTGTGCTATGCCAACATGGATGATATGGCTGTGCAAATTGCTTTGCAAAGGATTCGCACCTTTGTGCTTCAAAACAAGGAGGTCGTGGTGCCTAACAAGAAACATTGTTGGCACAGTAACTTGAGGCTGAGCCTCAAAACCAGAAGGTTTGATGATATCATGATGTCACCTCACTCCCCCATACCTCAGTCACCTCTAGTTAAAGCCACAATTTGA 1455 0.4399 MGSMAVDQTQLLSKMVFGDGHGEASPYFDGWKAYDENPFHPTENPNGVIQMGLAENQLTSDLVEDWILNNPEASICTPEGINDFRAIANFQDYHGLPEFRNAVAKFMGRTRGNKVTFDPDRIVMSGGATGAHEVTTFCLADPGDAFLVPIPYYPGFDRDLRWRTGIKLVPVMCDSSNNFKLTKQALEDAYEKAKEDNIRVKGLLITNPSNPLGTVMDRNTLRTVVSFINEKRIHLVSDEIYSATVFSNPSFISIAEILEEDTDIECDRNLVHIVYSLSKDMGFPGFRVGIIYSYNDAVVQCARKMSSFGLVSTQTQHLLASMLNDDEFVEKFLAESAKRLAQRYRVFTGGLAKVGIKCLQSNAGLFVWMDLRQLLKKPTLDSEMELWKVIIHEVKINVSPGSSFHCTEPGWFRVCYANMDDMAVQIALQRIRTFVLQNKEVVVPNKKHCWHSNLRLSLKTRRFDDIMMSPHSPIPQSPLVKATI 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00461 484 FunFam 1-aminocyclopropane-1-carboxylate synthase 3 71 325 - -
Pumo6g00461 484 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 276 289 IPR004838 GO:0003824|GO:0009058|GO:0030170
Pumo6g00461 484 Coils Coil 176 196 - -
Pumo6g00461 484 Gene3D Aspartate Aminotransferase, domain 1 37 430 IPR015422 GO:0003824
Pumo6g00461 484 CDD AAT_like 89 432 - -
Pumo6g00461 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 84 100 - -
Pumo6g00461 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 197 221 - -
Pumo6g00461 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 51 77 - -
Pumo6g00461 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 121 141 - -
Pumo6g00461 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 270 294 - -
Pumo6g00461 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 233 256 - -
Pumo6g00461 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 143 164 - -
Pumo6g00461 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 302 325 - -
Pumo6g00461 484 Pfam Aminotransferase class I and II 49 431 IPR004839 GO:0009058|GO:0030170
Pumo6g00461 484 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 19 435 - -
Pumo6g00461 484 SUPERFAMILY PLP-dependent transferases 22 435 IPR015424 -
Pumo6g00461 484 Gene3D - 71 325 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00461 Pumo-Chr6 5793560 5796763 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00461 K20772 - gmx:100037458 959.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02348 8 60702694 60705755 Pumo6g00461 6 5793560 5796763 PCT