LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo8g02326	ATGGTGAATCGTCGACGCCTCACTCGGGTGGCGACGAGCGACGATGAAGACGAAGCACCGCGTCCACAACGCACGCGGAAGAGGATGAGGCTTCTCGAGGAAGATAACGATGACGAGAATAATAATGAAGAAGAAGAAGAAGAGGAGGCACCGGAACCGCCTCAACCTGTGGAGGACGCTAAACCTATTGGTGAACCCGTTAGGGTTTCAGGAAAAGGAAGAGGCAGGAAGAGGCACTATGACTCCTTCGAATTCGATGGCATCCAATATACTCTCGAGGATCCTGTTCTTCTCGTACCCGAGGAGAAAAACCAAAAGCCATATGTCGCAATTATCAAGGACATTACACAGTCTATCAATGGCAACGTGAAAGTGTTGGGGCAGTGGTTTTATCGTCCTGAAGAAGCTGAGAAAAAAGGTGGGGGAAACTGGCAATCATGTGATACGAGGGAGCTATTTTATAGTTTCCACCGTGATGATGTTCCTGCAGAGGCTGTTATGCACAAGTGTGTGGTGCATTTTGTTCCCAAACACAAACAGCTTCCAAAACGCAAGGATCACCCCGGGTTTATTGTACAGAAGGTGTATGACACCGTGGAAAGAAAACTCTGGATGCTGAGTGATAAGGACTATGAAGATATTAAACAGCAAGAGATTGATGTGCTTGTAGAGAAGACTCTGGAACGTATTGGTGAACTACTTGACATTGAGCCCGAGGAAGCCCCTGATGATGATGAGGACCAATTGAAAAATAAAAAAAGCTTAAGGAGAAAGAGTGTTTCACCTGTTGATGTTTCAAAGGAGGAGGAAGAAACTCTTAAGAGTGAACAACATCCAAAGTCTGAAACACCAGCTAGTTGTGTAACTAATGCCTCAGAGTATTATCGCATATTGGTAACTTTCAATGCACTAACTGGAGATAGCCATCGTGACAAATGGTTAGAAAGGTTGCTTCAACGCATTCAGTACATGTGTGATTCTACTGATAGCAAAGAAAGGGATAAAGGATTAGGAAATGTTAATTCTGATGAAATCAACAGTGGAAGCAAGAATAGAAGTTCAGAATCAGCAAATGACTGTCAAGACAAGGGTCAGAAGAGTTCCGAGTCTTTTATCTGGCCAGATGCTGCTGTTTCAGCCATAGTTGCTCTCGAAAAAGCTTCACATGATGCTCTTTCATCAGATTATATGAAGTACAACCAAAAGTTGCGGCAACTAGCTTTTAATCTCCAGAAAAATGCAGTGCTAGCACGCCATCTATTAAATGGAGAGTTGGAGCCTTCAAAAATATTAAATATGACACCCAATGAATTAAAGGAGGGTTTGGTTGCTGAGGAAAAAACCAAGGAGGAGCCTGACGAGACCCAGCATTTGCAAATGACAGATGCCCGCTGCTCAAAATGCATGGGTTGTAAGGTGGGCTTGAGAGAGATTATCCAAGCTGGAAATAATGAACGTTATCAGCTGGAATGTGTTTCCTGTGGTCATTCCTGGTATGCATCCCGGGATGAGGTGTCTATGCCAGCAATAGATGCATCGGATTCAAAGGGAAACATAGGCACAGCGCCATAG	1572	0.4415	MVNRRRLTRVATSDDEDEAPRPQRTRKRMRLLEEDNDDENNNEEEEEEEAPEPPQPVEDAKPIGEPVRVSGKGRGRKRHYDSFEFDGIQYTLEDPVLLVPEEKNQKPYVAIIKDITQSINGNVKVLGQWFYRPEEAEKKGGGNWQSCDTRELFYSFHRDDVPAEAVMHKCVVHFVPKHKQLPKRKDHPGFIVQKVYDTVERKLWMLSDKDYEDIKQQEIDVLVEKTLERIGELLDIEPEEAPDDDEDQLKNKKSLRRKSVSPVDVSKEEEETLKSEQHPKSETPASCVTNASEYYRILVTFNALTGDSHRDKWLERLLQRIQYMCDSTDSKERDKGLGNVNSDEINSGSKNRSSESANDCQDKGQKSSESFIWPDAAVSAIVALEKASHDALSSDYMKYNQKLRQLAFNLQKNAVLARHLLNGELEPSKILNMTPNELKEGLVAEEKTKEEPDETQHLQMTDARCSKCMGCKVGLREIIQAGNNERYQLECVSCGHSWYASRDEVSMPAIDASDSKGNIGTAP	523

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo8g02326	523	SMART	BAH_4	88	207	IPR001025	GO:0003682
	Pumo8g02326	523	MobiDBLite	consensus disorder prediction	340	367	-	-
	Pumo8g02326	523	ProSiteProfiles	TFIIS central domain profile.	309	466	IPR003618	GO:0006351
	Pumo8g02326	523	SMART	mid_6	343	448	IPR003618	GO:0006351
	Pumo8g02326	523	MobiDBLite	consensus disorder prediction	328	367	-	-
	Pumo8g02326	523	Gene3D	-	68	293	IPR043151	-
	Pumo8g02326	523	MobiDBLite	consensus disorder prediction	245	278	-	-
	Pumo8g02326	523	Pfam	Transcription factor S-II (TFIIS), central domain	305	456	IPR003618	GO:0006351
	Pumo8g02326	523	MobiDBLite	consensus disorder prediction	1	76	-	-
	Pumo8g02326	523	Pfam	BAH domain	89	203	IPR001025	GO:0003682
	Pumo8g02326	523	PANTHER	BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN	1	523	-	-
	Pumo8g02326	523	MobiDBLite	consensus disorder prediction	238	285	-	-
	Pumo8g02326	523	MobiDBLite	consensus disorder prediction	8	35	-	-
	Pumo8g02326	523	ProSiteProfiles	BAH domain profile.	88	207	IPR001025	GO:0003682
	Pumo8g02326	523	SUPERFAMILY	Elongation factor TFIIS domain 2	303	439	IPR036575	GO:0006351
	Pumo8g02326	523	Gene3D	-	294	440	IPR036575	GO:0006351
	Pumo8g02326	523	MobiDBLite	consensus disorder prediction	36	53	-	-
	Pumo8g02326	523	CDD	BAH_plant_3	70	216	-	-
	Pumo8g02326	523	Coils	Coil	28	49	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo8g02326	Pumo-Chr8	60492776	60501471	Dispersed/Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo8g02326	-		-	gmx:100776280	920.613

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo8g02326	8	60492776	60501471	Pumo6g00500	6	6239202	6244412	PCT