Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00500 ATGAAAAATAGCAAGGTTCTTGATTTGGTATCAAAACACAAACAAAATCAAAATTATCGTGTGACAGTGGCGGTGGGTGTAAGAATGGGAAATCGACGCTTCACTCAGGTCGCAACCAGCGACGACGAGGACGAAGCGCCGCCTCCTCCTAAGCAGCAATCTTCGGTCAGTGCCTCCGTAGAGAACCGTTCGAAGCAGCAGCAGCGCAAGAGGAAGAGGATGAAGCTTCAAGAAGAAGAGGAAGAGGAGAAGGAGAACGAGAAGGAAAAGGAGGAAGACAAGAAGAAGAAGAGAAAGATCAAAGACAAGCAGGAAGAGAGATCCAACGAAGAGGAGGAGTCGCCGCAGGAGGACGCCAAGCCCATTGGCGAACCGGTTAGGTTTTCCGGAAAGGGAAGGGGCCGGAAAAAGCATTTTGAATCCTTCGAGTACGATGGGAACCAATACACTCTGGAGGACCCTATACTTCTCACACCTGAGGACAAAGACCAAAAGCCATACGTGGCGATTATTAAGGACATTACGCAATCCCTAAATGGCAGCATGATGGTCACAGGGCAGTGGTTTTATCGTCCCGAAGAAGCTGAGAGAAAAGGTGGTGGCAGCTGGCAATCACGTGACACAAGGGAGCTGTTTTATAGTTTTCACCGTGATGATGTTCCTGCAGAATCTGTTATGCACAAGTGTGTGGTGCATTTTGTTCCCATACACAAACAGCTTCCAAATCGTAAGCAGCATCCTGGGTTTATTGTGCAAAAGGTGTATGACACAGTAGAAAGGAAACTCTGGAAGCTAACTGATAAGGACTATGAGGACAATAAACAGCAAGAAATTGATGAGCTTGTTCAGAAAACTCTTCAACGTTTGGGCGAACTACTTGACATTGAGCCTGAGGAACCTGTTGCTGATCAGGAAGATCTGATGAAAAATAAAAGAATCTTAAGGAAAAAGAGCATTTCACCTCTCGATGTTTCAAAGGAGGAGGAAACAACTCGTAAGAGTGACCAACCTCTGAAACCTGAAACACCAGGGAGTTGTGTAAATATTGCCTCAGAGCATTACCGCATATTAGTGGATTCCAATGCTCTAACTGGAGATACCCATCGAGACAAATGTTTGGAGAAGTTGCTTCAAAGTGTTCAATTCATGTTTAATTCTGATGACAGCATAAAGAAGGAAGAGAAAGGAAATGACAATTCTGACGCAATCAACAATGGAAGCAATAACAAAAGTTTAGAATCTGCTAATGAATGTAAAGGCAAGGTTCAAAAGAGTTCCAAGTCTTTTGTCTGGCCAGATGATGCTGTTCCAGCTGTAGTTGCTCTGGAAAAAGCTTCACATGATACCTTTTCATCAGATTATCAGAAGTATAACCAAAAACTACGACAATTAGTATTTAATCTCAAGAACAATGCAATCCTAGCACGTCGTCTACTAAATGGAGAGTTGGAACCTTCTAAAATATTGAATATGACACCCAACGAATTGAAGGAGGGTTTGACTGCTGAGGAAACAACCAAGAAGGAGCCTGATGAGTCACAACACATGCAGATGACGGGTGCCCGATGCCGTAGATGCACGGAGTGTAAGGTGGGCTTGAGGGACATTATCCATGCTGGACATGGTGATCGATATCAGCTGGAATGTACTGCCTGTGGTCATTCCTGGTTTGCCTCCCGTGATGAGGTGTCTGAGCTGACTATAGATGCATCAGATTCAAAAAGAAGTGTAGGCACGGCGCCATGGGCCACCGCAAAATTCGAAGATGTTGAGAAGAAGCTCGTGAGTCCCCGCGAATCTGAAAAGAATGACATCTTTAAGAAAACAAGTGAAGCATATATGCCAGTTTTGGATGCCCAGAAATCATTTGGCAAGTCTAGGAAAGATGAAAACGTCCAAGCTTCAAAACACGCTGACTAG 1920 0.4443 MKNSKVLDLVSKHKQNQNYRVTVAVGVRMGNRRFTQVATSDDEDEAPPPPKQQSSVSASVENRSKQQQRKRKRMKLQEEEEEEKENEKEKEEDKKKKRKIKDKQEERSNEEEESPQEDAKPIGEPVRFSGKGRGRKKHFESFEYDGNQYTLEDPILLTPEDKDQKPYVAIIKDITQSLNGSMMVTGQWFYRPEEAERKGGGSWQSRDTRELFYSFHRDDVPAESVMHKCVVHFVPIHKQLPNRKQHPGFIVQKVYDTVERKLWKLTDKDYEDNKQQEIDELVQKTLQRLGELLDIEPEEPVADQEDLMKNKRILRKKSISPLDVSKEEETTRKSDQPLKPETPGSCVNIASEHYRILVDSNALTGDTHRDKCLEKLLQSVQFMFNSDDSIKKEEKGNDNSDAINNGSNNKSLESANECKGKVQKSSKSFVWPDDAVPAVVALEKASHDTFSSDYQKYNQKLRQLVFNLKNNAILARRLLNGELEPSKILNMTPNELKEGLTAEETTKKEPDESQHMQMTGARCRRCTECKVGLRDIIHAGHGDRYQLECTACGHSWFASRDEVSELTIDASDSKRSVGTAPWATAKFEDVEKKLVSPRESEKNDIFKKTSEAYMPVLDAQKSFGKSRKDENVQASKHAD 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00500 639 Pfam BAH domain 148 264 IPR001025 GO:0003682
Pumo6g00500 639 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 29 633 - -
Pumo6g00500 639 SMART mid_6 366 506 IPR003618 GO:0006351
Pumo6g00500 639 MobiDBLite consensus disorder prediction 620 639 - -
Pumo6g00500 639 MobiDBLite consensus disorder prediction 390 418 - -
Pumo6g00500 639 SUPERFAMILY Elongation factor TFIIS domain 2 360 497 IPR036575 GO:0006351
Pumo6g00500 639 MobiDBLite consensus disorder prediction 88 120 - -
Pumo6g00500 639 Coils Coil 62 113 - -
Pumo6g00500 639 ProSiteProfiles BAH domain profile. 147 266 IPR001025 GO:0003682
Pumo6g00500 639 Gene3D - 131 352 IPR043151 -
Pumo6g00500 639 MobiDBLite consensus disorder prediction 400 418 - -
Pumo6g00500 639 CDD BAH_plant_3 129 275 - -
Pumo6g00500 639 Pfam Transcription factor S-II (TFIIS), central domain 364 515 IPR003618 GO:0006351
Pumo6g00500 639 Gene3D - 353 498 IPR036575 GO:0006351
Pumo6g00500 639 MobiDBLite consensus disorder prediction 323 345 - -
Pumo6g00500 639 SMART BAH_4 147 266 IPR001025 GO:0003682
Pumo6g00500 639 MobiDBLite consensus disorder prediction 622 639 - -
Pumo6g00500 639 MobiDBLite consensus disorder prediction 21 134 - -
Pumo6g00500 639 ProSiteProfiles TFIIS central domain profile. 368 524 IPR003618 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00500 Pumo-Chr6 6239202 6244412 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00500 - - gmx:100787670 1072.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00500 6 6239202 6244412 Pumo6g00500 6 6239202 6244412 ECH
Pumo8g02326 8 60492776 60501471 Pumo6g00500 6 6239202 6244412 PCT