Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02262 ATGGACGAATCGTTCACTCTACCTCCTCCAATGTCCTCTTCTCAGCACGACCACGTCCAACGAATGATAAACTCGAATCGCTACAGGTCACCTTCAAAAACAATCTACTCCGACAGGTTCATTCCGAGCAGATCCGGTTCCAATTTCGATCTCTTCAATCTACCGTCGTCGTCAGAGGACAGTTGCAGTTGCAGCCCCTACAGCACCGCGCTGCGCAGTGCCTTGTTTGGACCAGACACTCCCGATAAATTTGAAAGCCCTAATATATTCCGTTACAAAACGGAGACTCGAAAGTCCATGCATTCTCTCTCACCTACCCCTTTTACTTTCCAGGATGACTTTGTCCCTGGTTATGACCACAATCGTAAACCTCCTAAGCGTCCTCGCAAGATTCCTCCCTCGTCTTTTAAGGTTTTGGACGCCCCTGCGCTGCAAGACGATTTTTATCTGAATCTCGTGGATTGGTCCTCCAACAATGTCTTGGCTGTGGCTCTGGAAAACTCTGTTTATTTGTGGAATGCCTCTAGCAGCAAGGTTGGCTGGGCTCCACTTGGTACCTACCTGGCTGTTGGATCAAACAGTGGTAAAGTCCAGATTTGGGATGTATCTCAAGGCAAGTCAATAAGAACTATGGAGGGTCATCGATTACGTGTTGGGGCCTTGGCCTGGAGTTCATCTCTTTTGTCTTCTGGTGGTCGGGATAAAAGCATTTATCAACGAGATATACGTGCACAGGAGGATTTTGTCAGTAAACTGTCTGGGCACAAGTCAGAGGTTTGTGGACTGAAGTGGTCTTATGATAACCGTGAGTTAGCATCCGGAGGAAATGACAACAGGTTGCTTGTTTGGAATCAAAACTCAACCCAGCCCATCCTGAAGTTCTGTGAGCATACAGCAGCTGTTAAAGCTATTGCGTGGTCTCCTCATGTAAATGGACTTCTTGCATCTGGAGGAGGAACTGCAGACCGAAGCATTCGTTTTTGGAATACAACCACAAACTCACAGTTAAACTGTATTGACACTGGGAGTCAGGTTTGTAACCTTGTTTGGTCTAAAAATGTGAATGAACTGGTAAGCACACATGGTTACTCCCAGAACCAGATAATAGTTTGGAAATACCCCACCATGTCAAAGCTAGCAACTCTTACAGGTCATTCTTACAGAGTTCTTTATCTTGCCATCTCTCCTGATGGGCAGACTATCGTCACTGGAGCTGGAGATGAAACTCTTAGGTTTTGGAATGTATTCCCTTCACGGAAATCACAGAATACTGAGAGTGAAATTGGAGCTTCATCTTTTGGAAGAACTATCATCAGATGA 1320 0.4576 MDESFTLPPPMSSSQHDHVQRMINSNRYRSPSKTIYSDRFIPSRSGSNFDLFNLPSSSEDSCSCSPYSTALRSALFGPDTPDKFESPNIFRYKTETRKSMHSLSPTPFTFQDDFVPGYDHNRKPPKRPRKIPPSSFKVLDAPALQDDFYLNLVDWSSNNVLAVALENSVYLWNASSSKVGWAPLGTYLAVGSNSGKVQIWDVSQGKSIRTMEGHRLRVGALAWSSSLLSSGGRDKSIYQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLLVWNQNSTQPILKFCEHTAAVKAIAWSPHVNGLLASGGGTADRSIRFWNTTTNSQLNCIDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWKYPTMSKLATLTGHSYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSRKSQNTESEIGASSFGRTIIR 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02262 439 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 25 434 IPR033010 GO:0010997|GO:0097027|GO:1904668
Pumo8g02262 439 Pfam Anaphase-promoting complex subunit 4 WD40 domain 177 225 IPR024977 -
Pumo8g02262 439 SMART WD40_4 332 372 IPR001680 GO:0005515
Pumo8g02262 439 SMART WD40_4 165 201 IPR001680 GO:0005515
Pumo8g02262 439 SMART WD40_4 375 414 IPR001680 GO:0005515
Pumo8g02262 439 SMART WD40_4 287 329 IPR001680 GO:0005515
Pumo8g02262 439 SMART WD40_4 245 284 IPR001680 GO:0005515
Pumo8g02262 439 SMART WD40_4 204 241 IPR001680 GO:0005515
Pumo8g02262 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 252 284 - -
Pumo8g02262 439 SUPERFAMILY WD40 repeat-like 143 414 IPR036322 GO:0005515
Pumo8g02262 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 252 293 IPR001680 GO:0005515
Pumo8g02262 439 Pfam WD domain, G-beta repeat 249 284 IPR001680 GO:0005515
Pumo8g02262 439 Pfam WD domain, G-beta repeat 290 329 IPR001680 GO:0005515
Pumo8g02262 439 Pfam WD domain, G-beta repeat 378 414 IPR001680 GO:0005515
Pumo8g02262 439 MobiDBLite consensus disorder prediction 7 28 - -
Pumo8g02262 439 Gene3D - 125 418 IPR015943 GO:0005515
Pumo8g02262 439 ProSitePatterns Trp-Asp (WD) repeats signature. 401 415 IPR019775 -
Pumo8g02262 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 382 415 - -
Pumo8g02262 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 382 423 IPR001680 GO:0005515
Pumo8g02262 439 MobiDBLite consensus disorder prediction 1 28 - -
Pumo8g02262 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 179 210 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02262 Pumo-Chr8 59759708 59763994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02262 188 419 Miscellaneous Gene Families AT5G08390 20.851 2.20e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02262 K03364 - gmx:100785726 828.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02262 8 59759708 59763994 Pumo8g02262 8 59759708 59763994 ECH
Pumo4g01582 4 20059620 20067932 Pumo8g02262 8 59759708 59763994 PCT