Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01582 ATGGAAACATACATGAAAAAAGATCGCGCCACCGGAACCGTCATGGAGGACTCGTCCGGCCACCTGAATATTTCTCCGGCCGCCGCCGCGGCGACTCTCCGGCACGTGGACCGCATGATCAACTCCAACCACTACACCTCTCCTTCCAGAACAATCTACTCCGACCGCTTCATTCCGAGCAGATCTGCCTCCAAATTCGCACTCTTCGACATCGCCACGCCGCCTGAGGGCCGCGACGACAGCTCCAGCGCCTACACCACGCTCCTCCGCACCGCGCTCTTCGGCCCCGACTGCCGCCGGAGTCGCGCCGCCGCTCACGCCGGAGAAAACCGCCTCGCCGGCGATGACGCTTCCCAGCCCGAATATTTTCCGGTACAAGACCGAGACGCGCCAGTCCATGCACTCGCTCTCGCCGTTTATGGCCCGGTCAAAGCTCCGAGGAAGGTTCCTAGGTCGCCTTTTAAGGTTCTGGATGCGCCTGCGCTGCAAGATGATTTTTACTTGAATCTCGTGGATTGGTCTTCGCACAATGTGTTGGCTGTTGGTCTGGGAAACTGTGTTTATCTCTGGAATGCTTGTAGCAGCAAGGTTACTAAATTATGTGACTTGGGGATTGATGACCTTGTTTGTTCGGTTGGCTGGGCTCAACGCGGTACACACCTTGCTGTCGGAACTAGCAATGGTAAAGTTCAGATTTGGGACGCATCTCGATGCAAGAAGATAAGATCTATGGACGGTCATCGGTTACGAGTTGGGGCATTGGCCTGGAGTTCATCTCTTTTGTCTTCTGGCGGCAGGGATAAGAATATTTATCAAAGAGATATCCGTGCACAAGAAGATTTTGTCAGTAAACTGTCAGGGCACAAATCAGAGGTTTGTGGACTGAAGTGGTCTTATGATAACCGTGAGTTGGCATCTGGAGGAAATGACAACAGATTGTTTGTTTGGAATCAACACTCAACTCAGCCTGTCCTGAAGTACTGTGAGCATACAGCAGCTGTTAAAGCTATTGCATGGTCTCCTCATCTTCATGGACTTCTTGCATCTGGGGGAGGAACTGCAGACCGATGCATACGTTTCTGGAATACAACCACAAACTCACACTTAAGCTGTATGGACACTGGAAGTCAGGTTTGCAATCTTGTCTGGTCCAAAAATGTCAATGAGCTAGTAAGCACACATGGCTATTCTCAGAACCAGATAATTGTTTGGAGATATCCCACCATGTCAAAGTTGGCCACTCTTACGGGCCATACCTACAGAGTTCTTTATCTTGCCATTTCTCCAGATGGACAGACTATTGTAACCGGAGCTGGAGACGAAACACTTAGGTTCTGGAATGTATTCCCCTCCCCTAAATCACAGAACACTGACAGTGAAATCGGAGCATCATCTCTTGGAAGAACTATTATCAGGTGA 1419 0.5053 METYMKKDRATGTVMEDSSGHLNISPAAAAATLRHVDRMINSNHYTSPSRTIYSDRFIPSRSASKFALFDIATPPEGRDDSSSAYTTLLRTALFGPDCRRSRAAAHAGENRLAGDDASQPEYFPVQDRDAPVHALALAVYGPVKAPRKVPRSPFKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDLVCSVGWAQRGTHLAVGTSNGKVQIWDASRCKKIRSMDGHRLRVGALAWSSSLLSSGGRDKNIYQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNSHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTDSEIGASSLGRTIIR 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01582 472 ProSiteProfiles Trp-Asp (WD) repeats profile. 415 448 IPR001680 GO:0005515
Pumo4g01582 472 Pfam Anaphase-promoting complex subunit 4 WD40 domain 205 258 IPR024977 -
Pumo4g01582 472 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 285 317 - -
Pumo4g01582 472 FunFam FIZZY-related 2 isoform 1 150 450 - -
Pumo4g01582 472 SUPERFAMILY WD40 repeat-like 162 448 IPR036322 GO:0005515
Pumo4g01582 472 ProSiteProfiles Trp-Asp (WD) repeats profile. 209 243 IPR001680 GO:0005515
Pumo4g01582 472 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 415 448 - -
Pumo4g01582 472 ProSiteProfiles Trp-Asp (WD) repeats profile. 285 326 IPR001680 GO:0005515
Pumo4g01582 472 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 42 467 IPR033010 GO:0010997|GO:0097027|GO:1904668
Pumo4g01582 472 Gene3D - 143 452 IPR015943 GO:0005515
Pumo4g01582 472 Pfam WD domain, G-beta repeat 322 362 IPR001680 GO:0005515
Pumo4g01582 472 Pfam WD domain, G-beta repeat 411 447 IPR001680 GO:0005515
Pumo4g01582 472 Pfam WD domain, G-beta repeat 282 317 IPR001680 GO:0005515
Pumo4g01582 472 ProSitePatterns Trp-Asp (WD) repeats signature. 434 448 IPR019775 -
Pumo4g01582 472 SMART WD40_4 150 191 IPR001680 GO:0005515
Pumo4g01582 472 SMART WD40_4 194 234 IPR001680 GO:0005515
Pumo4g01582 472 SMART WD40_4 408 447 IPR001680 GO:0005515
Pumo4g01582 472 SMART WD40_4 237 274 IPR001680 GO:0005515
Pumo4g01582 472 SMART WD40_4 278 317 IPR001680 GO:0005515
Pumo4g01582 472 SMART WD40_4 320 362 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01582 Pumo-Chr4 20059620 20067932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01582 221 450 Miscellaneous Gene Families AT5G08390 21.459 1.28e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01582 K03364 - gmx:100780928 826.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01582 4 20059620 20067932 Pumo4g01582 4 20059620 20067932 ECH
Pumo4g01582 4 20059620 20067932 Pumo8g02262 8 59759708 59763994 PCT