Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02222 ATGGGAAGCCCCCCTTCCTCTGATTCAGAACTCCCTTGTTCTTATATTCCCGTACCCGATGGACCCCACTCTCCCGCAGAACCTCGAAGAGAGGTTGTGATCTTCTGTGGGTTGCTGGTGCTTGCGTCCTTGGTGGCCTTCAATGGCTACAGAGATCATCATCATGTTTCATCATCATTGCCAACAACGTCGAATGAATTAGAATTGAGCCCCGACACAGTACCATGGTCAACATGGCAGACGGTTTCACGTGGCGTGTCCGCAGGGGTCTCCGAGAAGTCCAGCTGGCTATTAATGAGCAGCAACAATGGGAACGGGGAATCGTATCCTTGGAACAATAGCATGCTGTCATGGCAGAGAACAGCTTACCATTTCCAACCTGAGAAGAATTGGATGAACGATCCTAATGGTCCAATGTACTACAAAGGGTGGTATCACTTCTTCTACCAGTACAATCCGAAGGGTGCAGTTTGGGGTGACATAGTTTGGGGACACGCTGTATCAAGGGACATGATCCACTGGCTTCACCTTCCACTAGCAATGGTGGCTGATCAATGGTATGACAAAAACGGTGTGTGGACTGGCTCTGCCACCATCTTACCCGATGGTCAAATCATCATGCTATACACTGGTTCCACCAATGAGTCAGTGCAGGTGCAAAACCTTGCATACCCTGCTGACCCCTCTGATCCCCTCCTTGTTGATTGGATCAAATACCCTGCAAATCCTGTTCTATTCCCACCACCAGGCATTGATGCCAAAGATTTCCGTGACCCCACCACTGCATGGCTCACCTCTGAAGGAAAGTGGCGCATCACTATTGGCTCTAAGCTTAACAAAACTGGCATTGCCTTGGTTTATGACACCAATGACTTTAAGACCTATGAGCGTGTGGAGGGAGTGCTTCATGCTGTGCCTGGCACTGGCATGTGGGAGTGTGTTGACTTCTTCCCTGTATCTAGCAAGGGTGGAAATGGCTTGGACACTTCAATCAATGGGGAGAATGTGAAGCATGTGGTAAAGGTTAGCTTGGATGATGATAGACATGATTACTATGCATTGGGGACTTATGATGAGAAGAATGTTAAGTTCACACCAGATGACTTCAAGAATGATGTTGGTATTGGACTCAGATATGACTATGGTATATTTTATGCATCCAAGACATTTTATGATCAGAGTAAGGGGAGGAGAGTGTTGTGGGGTTGGATTGGAGAGTCTGATAGCGAATACGCTGACGTGGCCAAAGGTTGGGCATCAGTTCAGGGTATTCCAAGAACAGTGACACTTGATAAGAAAACTGGTAGCAACTTACTTCAATGGCCAGTGGCAGAGGTAGAACGTTTGAGATTGAGAAGCGATGAGTTTCAAAATTTGAAGGTGAAGCCAGGGTCAGTGGTGCCACTAGAAATTGGAACAGCTGCACAGTTGGACATTGTAGCTGAGTTTGAGATAGATAAGGAAGCCTTGGAGAAGACAGGCCAGTCCAATAAGGAGTACAAGTGTAGCACCAGTAGTGGAGCAGCTGAACGTGGTGCCTTGGGACCTTTTGGTCTTCTAGTTTTGGCAGATGATGATCTTTCTGAATACACTCCCACATACTTTTATGTGGTCAAAGGAAGCAATGGACAACTTAAAACTTCCTTCTGCTCTGATCAATCAAGGTCTTCTCTAGCAACTGATGTTAGTAAGAAAATCTTTGGAAGCATTGTTCCAGTACTAAAAGACGAAAAGTTGTCTGTAAGGATATTGGTGGACCATTCTATAGTGGAAAGCTTTGCTCAAGGTGGAAGGACGTGTGTAACATCTCGAGTTTATCCAACGAAGGCAATCTATGGAGCTGCTAGGTTGTTTTTATTCAATAATGCTACTGAGGCCACTGTGACTGCTTCAGTTAAGGTTTGGCAAATGAATTCTGCATTCATACGCCCATTCCACCCTGACCAAAGGAATTCAATTTAA 1962 0.4592 MGSPPSSDSELPCSYIPVPDGPHSPAEPRREVVIFCGLLVLASLVAFNGYRDHHHVSSSLPTTSNELELSPDTVPWSTWQTVSRGVSAGVSEKSSWLLMSSNNGNGESYPWNNSMLSWQRTAYHFQPEKNWMNDPNGPMYYKGWYHFFYQYNPKGAVWGDIVWGHAVSRDMIHWLHLPLAMVADQWYDKNGVWTGSATILPDGQIIMLYTGSTNESVQVQNLAYPADPSDPLLVDWIKYPANPVLFPPPGIDAKDFRDPTTAWLTSEGKWRITIGSKLNKTGIALVYDTNDFKTYERVEGVLHAVPGTGMWECVDFFPVSSKGGNGLDTSINGENVKHVVKVSLDDDRHDYYALGTYDEKNVKFTPDDFKNDVGIGLRYDYGIFYASKTFYDQSKGRRVLWGWIGESDSEYADVAKGWASVQGIPRTVTLDKKTGSNLLQWPVAEVERLRLRSDEFQNLKVKPGSVVPLEIGTAAQLDIVAEFEIDKEALEKTGQSNKEYKCSTSSGAAERGALGPFGLLVLADDDLSEYTPTYFYVVKGSNGQLKTSFCSDQSRSSLATDVSKKIFGSIVPVLKDEKLSVRILVDHSIVESFAQGGRTCVTSRVYPTKAIYGAARLFLFNNATEATVTASVKVWQMNSAFIRPFHPDQRNSI 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02222 653 ProSitePatterns Glycosyl hydrolases family 32 active site. 124 137 IPR018053 GO:0004553|GO:0005975
Pumo8g02222 653 Pfam Glycosyl hydrolases family 32 C terminal 445 636 IPR013189 -
Pumo8g02222 653 SUPERFAMILY Concanavalin A-like lectins/glucanases 442 641 IPR013320 -
Pumo8g02222 653 Pfam Glycosyl hydrolases family 32 N-terminal domain 124 442 IPR013148 -
Pumo8g02222 653 Gene3D - 454 637 - -
Pumo8g02222 653 CDD GH32_Fruct1-like 130 430 - -
Pumo8g02222 653 MobiDBLite consensus disorder prediction 1 22 - -
Pumo8g02222 653 SMART glyco_32 124 597 IPR001362 GO:0004553|GO:0005975
Pumo8g02222 653 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 454 637 - -
Pumo8g02222 653 SUPERFAMILY Arabinanase/levansucrase/invertase 117 443 IPR023296 -
Pumo8g02222 653 Gene3D Glycosyl hydrolase domain; family 43 128 453 IPR023296 -
Pumo8g02222 653 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 128 454 - -
Pumo8g02222 653 Pfam Beta-fructofuranosidase, N-terminal domain 14 116 IPR021792 GO:0004564
Pumo8g02222 653 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 113 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02222 Pumo-Chr8 59326976 59331976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02222 4 645 Glycoside Hydrolase AT1G12240 64.350 0.0 849
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02222 K01193 - gmx:100798772 1261.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02222 8 59326976 59331976 Pumo8g02222 8 59326976 59331976 ECH
Pumo8g02222 8 59326976 59331976 Pumo4g01636 4 20676449 20681006 PCT