Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02213 ATGCACAAGAGCAGTTCCGGTTCAGCATTGGGCCCAGGAGGCTTGGACCTAACTCAAGCCTTCTTCAAGTCCATCATGAACGCTGCACCTTCTTCTACCACCAAGCGCCACAACAAAATCTCCGTTGTTGGAGCGGGCAACGTGGGAATGGCCATAGCCCAAACCATCCTCACTCAGGATCTCACCGACGAGCTCGTGCTCGTCGATGCGATTCCTGACAAACTCCGCGGCGAGATGCTGGACCTCCAGCACGCCGCGGCGTTCCTTCCTCGCACCAAAATTCAAGCCTCCACAGACTACTCTGTCACGGTGGGCTCTGACCTCTGCATTGTAACTGCCGGTGCCCGCCAAATCAATGGTGAGTCCCGACTCAATCTCCTACAAAGGAATGTCACCCTCTTTCAGAAAATCATACCTCCTTTGGTTCGTTACTCCCCAGACACCATTTTCCTCATTGTCTCAAATCCCGTGGACGTGCTCACTTACGTGGCATGGAAGCTTTCAGGGTTCCCTTCAAACCGTGTCATTGGCTCCGGCACTAACTTGGACTCTTCCCGTTTTCGTTTCCTCATTGCTGATCATCTTGATGTCAACGCCCAAGATGTCCAGGCTTTTATAGTGGGGGAACACGGTGACAGCTCAGTGGCTTTGTGGTCTAGTATTAGTGTTGGGGGTGTTCCGGTGCTGAGTTTTTTGGAGAAACAGCAAATTGCGTATGAGAAGGAAATGTTGGAGAACATACACAAGGAAGTTATAGAGAGTGCTTATGAAGTTATCAATCTGAAAGGGTACACTTCTTGGGCTATAGGATACTCGGTGGCAAACTTGGCGCGAACCATTCTTAGGGACCAAAGGAGGGTCCACCCTGTCTCGGTTCTTGCAAAGGGTTTTTATGACATCGATGGCGGGGAAGTGTTTCTTAGCTTGCCTGCACAACTCGGAAGAGGAGGAGTATTGGGTGTAACCAACGTGCACTTGACTGAAGAAGAGACTCAGAGGCTTAGGGACTCAGCCACCACAATCCTCGAGGTGCAGAATCAGTTGGCTATTTGA 1053 0.5081 MHKSSSGSALGPGGLDLTQAFFKSIMNAAPSSTTKRHNKISVVGAGNVGMAIAQTILTQDLTDELVLVDAIPDKLRGEMLDLQHAAAFLPRTKIQASTDYSVTVGSDLCIVTAGARQINGESRLNLLQRNVTLFQKIIPPLVRYSPDTIFLIVSNPVDVLTYVAWKLSGFPSNRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAFIVGEHGDSSVALWSSISVGGVPVLSFLEKQQIAYEKEMLENIHKEVIESAYEVINLKGYTSWAIGYSVANLARTILRDQRRVHPVSVLAKGFYDIDGGEVFLSLPAQLGRGGVLGVTNVHLTEEETQRLRDSATTILEVQNQLAI 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02213 350 NCBIfam L-lactate dehydrogenase 42 341 IPR011304 GO:0004459|GO:0005737
Pumo8g02213 350 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 23 177 IPR036291 -
Pumo8g02213 350 CDD LDH_1 35 347 - -
Pumo8g02213 350 PRINTS L-lactate dehydrogenase signature 64 88 IPR001557 GO:0016616|GO:0019752
Pumo8g02213 350 PRINTS L-lactate dehydrogenase signature 205 218 IPR001557 GO:0016616|GO:0019752
Pumo8g02213 350 PRINTS L-lactate dehydrogenase signature 39 63 IPR001557 GO:0016616|GO:0019752
Pumo8g02213 350 PRINTS L-lactate dehydrogenase signature 175 193 IPR001557 GO:0016616|GO:0019752
Pumo8g02213 350 PRINTS L-lactate dehydrogenase signature 151 171 IPR001557 GO:0016616|GO:0019752
Pumo8g02213 350 FunFam Malate dehydrogenase 33 179 - -
Pumo8g02213 350 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 21 349 - -
Pumo8g02213 350 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 180 343 IPR022383 GO:0016616
Pumo8g02213 350 PIRSF Lac_mal_DH 34 350 IPR001557 GO:0016616|GO:0019752
Pumo8g02213 350 ProSitePatterns L-lactate dehydrogenase active site. 207 213 IPR018177 GO:0004459
Pumo8g02213 350 Hamap L-lactate dehydrogenase [ldh]. 37 349 IPR011304 GO:0004459|GO:0005737
Pumo8g02213 350 SUPERFAMILY LDH C-terminal domain-like 178 348 IPR015955 GO:0003824|GO:0016616
Pumo8g02213 350 Gene3D - 180 348 IPR015955 GO:0003824|GO:0016616
Pumo8g02213 350 Gene3D - 19 179 - -
Pumo8g02213 350 Pfam lactate/malate dehydrogenase, NAD binding domain 39 177 IPR001236 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02213 Pumo-Chr8 59177062 59178386 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02213 K00016 - gmx:100818856 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02213 8 59177062 59178386 Pumo8g02213 8 59177062 59178386 ECH
Pumo8g02213 8 59177062 59178386 Pumo4g01654 4 21037098 21038564 PCT