Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01654 ATGCACAAGAGCGCTTCGGGTTCGACGTTGGGCCCGGGGGGCCTGGACCTAACCCAGGCCTTTTTCAAGCCCATAACGAACGCGGCCCCTCCCTCTCCCACGAAGCGGCACAACAAGATCTCGGTGGTCGGCGCGGGCAACGTGGGAATGGCCATCGCCCAGACCATCCTCACCCAGGACCTCACCGACGAGCTCGTTCTCGTCGACACCAACGCCGACAAGCTCCGCGGCGAGATGCTCGACCTCCAGCACGCCGCTGCCTTCCTCCCCCGCACCAAGATCCACGCCTCCGTCGACTCCTCCGTCACCGCCGGCTCCGATCTCTGCATCGTCACCGCCGGCGCCCGCCAGATCGCCTGGCGAAGGAACCTCAACCTCTTCCGCGCCATCATACCCCCTCTCGTTCGCTTCTCCCCCGACACCATTCTCCTCATCGTTTCCAACCCCGTCGATATCCTCACCTACGTAGCTTGGAAACTCTCCGGCTTCCCTTCCAACCGGGTCATCGGCTCCGGCACCAACTTGGACTCTTCCCGCTTCCGTTTCCTCATCGCCGATCACCTCGACGTCAACGCCCAGGACGTACAGGCTTATATAGTAGGGGAGCATGGGGATAGTTCGGTGGCGTTGTGGTCTAGCATTAGCGTTGGGGGTGTTCCAGTGCTGAGTTTTTTGGAGAATCAGCAGATTGCTTATGAGAAAGAGACGCTGGAGAATATACACAAGTCAGTGATAGACGGTGCCTATGAAGTAATCAGGCTGAAAGGGTACACTTCTTGGGCCATTGGGTACTCTGTGGCTAACTTGGCCCGGTCCCTTCTTAGGGACCAGAGGAAGATCCACCCTGTGTCTGTTCTGGCTAAGGGCTTTTATGGGATCGATGGAGATGTGTTCCTGAGCTTGCCGGCACAGCTCGGTAGAGGAGGGATACTGGGTGTGACCAATGTGCACTTGAATGAAGAGGAGACGCAGAGGCTTAAAGATTCGGCCAAGACCATCTTCGATCTGCAGACTCAGTTGGGTATTTGA 1029 0.5792 MHKSASGSTLGPGGLDLTQAFFKPITNAAPPSPTKRHNKISVVGAGNVGMAIAQTILTQDLTDELVLVDTNADKLRGEMLDLQHAAAFLPRTKIHASVDSSVTAGSDLCIVTAGARQIAWRRNLNLFRAIIPPLVRFSPDTILLIVSNPVDILTYVAWKLSGFPSNRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPVLSFLENQQIAYEKETLENIHKSVIDGAYEVIRLKGYTSWAIGYSVANLARSLLRDQRKIHPVSVLAKGFYGIDGDVFLSLPAQLGRGGILGVTNVHLNEEETQRLKDSAKTIFDLQTQLGI 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01654 342 PIRSF Lac_mal_DH 34 342 IPR001557 GO:0016616|GO:0019752
Pumo4g01654 342 CDD LDH_1 35 339 - -
Pumo4g01654 342 SUPERFAMILY LDH C-terminal domain-like 171 339 IPR015955 GO:0003824|GO:0016616
Pumo4g01654 342 PRINTS L-lactate dehydrogenase signature 64 88 IPR001557 GO:0016616|GO:0019752
Pumo4g01654 342 PRINTS L-lactate dehydrogenase signature 39 63 IPR001557 GO:0016616|GO:0019752
Pumo4g01654 342 PRINTS L-lactate dehydrogenase signature 144 164 IPR001557 GO:0016616|GO:0019752
Pumo4g01654 342 PRINTS L-lactate dehydrogenase signature 198 211 IPR001557 GO:0016616|GO:0019752
Pumo4g01654 342 PRINTS L-lactate dehydrogenase signature 168 186 IPR001557 GO:0016616|GO:0019752
Pumo4g01654 342 Gene3D - 173 340 IPR015955 GO:0003824|GO:0016616
Pumo4g01654 342 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 173 333 IPR022383 GO:0016616
Pumo4g01654 342 Pfam lactate/malate dehydrogenase, NAD binding domain 39 170 IPR001236 GO:0016491
Pumo4g01654 342 Gene3D - 20 172 - -
Pumo4g01654 342 NCBIfam L-lactate dehydrogenase 42 333 IPR011304 GO:0004459|GO:0005737
Pumo4g01654 342 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 18 340 - -
Pumo4g01654 342 ProSitePatterns L-lactate dehydrogenase active site. 200 206 IPR018177 GO:0004459
Pumo4g01654 342 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 23 170 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01654 Pumo-Chr4 21037098 21038564 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01654 K00016 - gmx:100803035 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01654 4 21037098 21038564 Pumo4g01654 4 21037098 21038564 ECH
Pumo8g02213 8 59177062 59178386 Pumo4g01654 4 21037098 21038564 PCT