Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02131 ATGGGTTGTTTTCACTCCAAAGTAAGAGAATTTCCTGTGGAAGACCCATTTGCTCTTGCATCAGAGACAGCCTTCAGTGTTAGTGATGTTGAAGCATTATATGAGCTTTTTAAGAGCATCAGCAGGTCTGTCATTGATGATGGACTGATAAGTAAGGAAGAATTTCAATTGGCAATTTTCAATAATAAGAAAAAGGAGAATCTTTTTACAAGTCGGATCTTTGATTTATTTGATGTCAAGAAGAAAGGAGTGATTGACTTTGGTGACTTCGTTAGAGCACTTAATGTCTTCCACCCATCTGCACCTATAGAAGTCAAGATAGATTTTTCATTTAGGCTCTACGACTTAGATAATACAGGATTTATAGAGCGCCATGAGGTCAAGCAAATGATAAATGCACTTCTTTGTGAAGCTGAAATTAAGTTGTCAGATGAAATGATAGAAACAATTATTAACAAGACTTTCTTAGATGCTGACCCCAATCAAGATGGAAAAATAGACAAGTCTGAGTGGCAAAATTTTGTTTGTGAAAATCCTTCACTGTTAAAAGTCATGACACTACCCTACCTGAGGGACATAACAACTGCTTTTCCAAGTTTTGTATTTCACTCAAAGGTGGAGGACGAAATTGCTGAATAA 639 0.3631 MGCFHSKVREFPVEDPFALASETAFSVSDVEALYELFKSISRSVIDDGLISKEEFQLAIFNNKKKENLFTSRIFDLFDVKKKGVIDFGDFVRALNVFHPSAPIEVKIDFSFRLYDLDNTGFIERHEVKQMINALLCEAEIKLSDEMIETIINKTFLDADPNQDGKIDKSEWQNFVCENPSLLKVMTLPYLRDITTAFPSFVFHSKVEDEIAE 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02131 212 PANTHER CALCINEURIN B 2 208 IPR045198 GO:0005509|GO:0019722|GO:0019900
Pumo8g02131 212 Pfam EF-hand domain pair 106 175 IPR002048 GO:0005509
Pumo8g02131 212 SMART efh_1 69 97 IPR002048 GO:0005509
Pumo8g02131 212 SMART efh_1 150 178 IPR002048 GO:0005509
Pumo8g02131 212 SMART efh_1 106 134 IPR002048 GO:0005509
Pumo8g02131 212 Gene3D - 15 209 - -
Pumo8g02131 212 PRINTS Recoverin family signature 120 138 - -
Pumo8g02131 212 PRINTS Recoverin family signature 73 94 - -
Pumo8g02131 212 PRINTS Recoverin family signature 166 186 - -
Pumo8g02131 212 CDD EFh 106 175 IPR002048 GO:0005509
Pumo8g02131 212 ProSiteProfiles EF-hand calcium-binding domain profile. 146 181 IPR002048 GO:0005509
Pumo8g02131 212 ProSitePatterns EF-hand calcium-binding domain. 159 171 IPR018247 -
Pumo8g02131 212 SUPERFAMILY EF-hand 19 201 IPR011992 -
Pumo8g02131 212 ProSitePatterns EF-hand calcium-binding domain. 115 127 IPR018247 -
Pumo8g02131 212 ProSiteProfiles EF-hand calcium-binding domain profile. 65 100 IPR002048 GO:0005509
Pumo8g02131 212 ProSiteProfiles EF-hand calcium-binding domain profile. 102 137 IPR002048 GO:0005509
Pumo8g02131 212 FunFam calcineurin B-like protein 3 15 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02131 Pumo-Chr8 58337066 58340099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02131 1 211 EF-hand Containing Proteins AT4G17615 75.117 1.43e-113 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02131 K06268 - gmx:100779020 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02131 8 58337066 58340099 Pumo8g02131 8 58337066 58340099 ECH
Pumo8g02131 8 58337066 58340099 Pumo4g01747 4 23021038 23025603 PCT