Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00082 ATGGAAAACACTGTTTCATCTCTCTCACTATGTTTCCCTCCAAACCCAAAACCCAACATTTTCCAAGCTTTCAGCTATAGACCTTCCCCACATTCCCCATTCCCACCCTCTAAAACCCACCACACAAAACCTCCCAGATTCACCACCCCCAGAAAGCACAGGACCAGAAAGGTGAAACCTTTCACCGAAAAAGACGCGTTTCCGTGCTCCCTACCCCTCCACAACAAAAACCCAATCTTCATCTACAAAGACATCAAGCGTTTCGCTCGCCAGAACAAGCTCAAGGAGGCTCTCACCATCTTGGACTACGTGGACCAACGCGGCATCCCCGTCAACGCCACAACGTTCTCTTCTGTCATCGCCGCGTGCACTCGCACCAAGTCATTGCCACAAGGGAGGGAAGTTCACACCCATATCAGAATCAATGGACTCGAAAACAACGCTTTCTTGCGGACAAAGCTTGTTCACATGTACACAGCATGTGGGTCGTTGGAAGAGGCACAGAAACTGTTTGATGGATTGCCCTGTGAGAGTGTGTACCCTTGGAACGCTTTGCTCAGAGGGACTGTGGTCTCGGGGAAGAGACAGTACATTGATGTGCTCAAGACTTTTACCGAGATGAGGGCATTGGGGGTTGAGTTGAATGTGTACAGTTTCTCCAATGTGATCAAGAGCTTTGCCGGTGCGACGGCGTTTTCGCAAGGATTGAAGACTCATGGGCTTTTGATTAAGAATGGATTGGTGGATAATTACATTCTTAGAACCAGCTTGATTGATATGTACTTCAAGTGTGGGAAGGTTAGGCTCGCGTGCCGGGTGTTTGAAGAAATTCCTGAGAAGGATATTGTTGCGTGGGGGGCAATGCTTGCTGGGTTTGCACACAATAGGTTGCAGAGGGAGGTGTTGGAGTATGTGAGGTGGATGGTGGAGGAAGGAGTGAAGCCGAATTCGGTTGTGATGACGATTGTGATTCCTGTGATTGGCGAAGTTTGTGCAAGGAGGTTGGGCAAGGAGTTTCATGCTTATGTTGTGAAAACGAAATCGTACTCTAAGCTGGTGCCGGTTCAGTCTGCTTTGATTGATATGTATTGCAAGTGTGGGGATATGATTTCGGCAAGACGGGTTTTTTATGGTTCGATGGAGAGGAATGTGGTTTGCTGGACGGCTCTGATGGCGGGTTATGCTGTGAATGGAAAACTAGAGCAGGCACTGAGGTCCACGATTTGGATGCAGCAAGAAGGGTTCAGGCCTGATGTGGTGACACTTGCCACTGTTCTTCCGGTTTGTGCACAGTTGAGGGCTCTGGAACAAGGGAGGCAGATTCATGCTTATGCTTTGAAACATTGGTTTCTGCCTAATGTGTCTGTAACTTCTTCATTGATGATGATGTACTCTAAGTGTGGTGCTGTTGAGTATTCTAGAAGATTATTTGATAATATGGAACAAAGGAATGTGATTTCATGGACGGCCATGATTGATTCGTATATAGAAAATGGGTATCTGTGTGAAGCACTTGGTGTGATTAGGTCAATGCAATTGTCAAAGCATAGGCCAGACTCTGTTGCTATAGGAAGGATGTTGAGTGTTTGTGGTGAACTAAAACTTGTAAAGCTTGGGAAGGAGATTCATGGGCAGATATTGAAAAGGGACTTTACATCAGTCCATTTTGTTTCTGCAGAACTTATCAATATGCTGAATAGACGTTCTCTTCAGAATCTCAGTTTCAACTTTCAAGCCCTAGACTTACTCCGACGAGGCCGCCAGAGTTATGAGCCTCTGCTGTGTGATTTGAGGCATACTGAATGGCAGATCGTACCACTGGTGGCCACTGTCATAGTTGGAACCATCCTTTTGCTCCTCTCTGATTTTGACTCTGCAGTTAACCCTTGA 1890 0.4661 MENTVSSLSLCFPPNPKPNIFQAFSYRPSPHSPFPPSKTHHTKPPRFTTPRKHRTRKVKPFTEKDAFPCSLPLHNKNPIFIYKDIKRFARQNKLKEALTILDYVDQRGIPVNATTFSSVIAACTRTKSLPQGREVHTHIRINGLENNAFLRTKLVHMYTACGSLEEAQKLFDGLPCESVYPWNALLRGTVVSGKRQYIDVLKTFTEMRALGVELNVYSFSNVIKSFAGATAFSQGLKTHGLLIKNGLVDNYILRTSLIDMYFKCGKVRLACRVFEEIPEKDIVAWGAMLAGFAHNRLQREVLEYVRWMVEEGVKPNSVVMTIVIPVIGEVCARRLGKEFHAYVVKTKSYSKLVPVQSALIDMYCKCGDMISARRVFYGSMERNVVCWTALMAGYAVNGKLEQALRSTIWMQQEGFRPDVVTLATVLPVCAQLRALEQGRQIHAYALKHWFLPNVSVTSSLMMMYSKCGAVEYSRRLFDNMEQRNVISWTAMIDSYIENGYLCEALGVIRSMQLSKHRPDSVAIGRMLSVCGELKLVKLGKEIHGQILKRDFTSVHFVSAELINMLNRRSLQNLSFNFQALDLLRRGRQSYEPLLCDLRHTEWQIVPLVATVIVGTILLLLSDFDSAVNP 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00082 629 Pfam Pentatricopeptide repeat domain 178 227 IPR002885 -
Pumo5g00082 629 NCBIfam pentatricopeptide repeat 255 283 IPR002885 -
Pumo5g00082 629 NCBIfam pentatricopeptide repeat 486 520 IPR002885 -
Pumo5g00082 629 Pfam PPR repeat 255 282 IPR002885 -
Pumo5g00082 629 Pfam PPR repeat 458 485 IPR002885 -
Pumo5g00082 629 Pfam PPR repeat 486 512 IPR002885 -
Pumo5g00082 629 Pfam PPR repeat 357 377 IPR002885 -
Pumo5g00082 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 484 518 IPR002885 -
Pumo5g00082 629 Pfam PPR repeat family 382 429 IPR002885 -
Pumo5g00082 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Pumo5g00082 629 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 85 426 IPR046960 GO:0003723|GO:0009451
Pumo5g00082 629 MobiDBLite consensus disorder prediction 31 56 - -
Pumo5g00082 629 Gene3D Tetratricopeptide repeat domain 432 575 IPR011990 GO:0005515
Pumo5g00082 629 Gene3D Tetratricopeptide repeat domain 81 193 IPR011990 GO:0005515
Pumo5g00082 629 Gene3D Tetratricopeptide repeat domain 349 431 IPR011990 GO:0005515
Pumo5g00082 629 Gene3D Tetratricopeptide repeat domain 194 348 IPR011990 GO:0005515
Pumo5g00082 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Pumo5g00082 629 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 441 548 - -
Pumo5g00082 629 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 234 334 - -
Pumo5g00082 629 FunFam Pentatricopeptide repeat-containing protein chloroplastic 349 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00082 Pumo-Chr5 3589313 3593152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00082 85 567 Glycoside Hydrolase AT3G49170 25.859 5.47e-49 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00082 - - gmx:100809249 1086.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g01964 7 52980537 52983298 Pumo5g00082 5 3589313 3593152 PCT