Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00991 ATGGGTTTGTTTTCTGGGATTTTTATGGGGGTGTTGTTCGGCATCGCATTTATGGCTGGATGGGCACGCATGATGAGGTACCGAAGCTGCAAGCGAATTGCAAAGGCAGCTGACATTAAACTCCTTGGATCCCTTAACAGAGATGATTTAAAGAAAATTTGTGGTGATAATTTGCCTGAGTGGATATCTTTTCCTGTATATGAACAGGTGAAATGGCTAAACAAGAAACTGACCAAACTTTGGCCATTTGTGGCAGAGGCAGCAACTATGGTGATCAGAGAGTCTGTTGAACCACTGCTAGAAGAGTACAGACCTCCTGGAATTACTTCACTGAAGTTCAGCAAGCTGTCACTTGGAAATGTGGCTCCGAAAATTGAAGGTATTCGTGTTCAGAGCTTAACCAAAGGTCAAATCATAATGGATATTGATTTCCGTTGGGGTGGTGATCCTAGTATTATTTTGGCTGTTGAAGCTGCACTTGTTGCATCAATCCCTATTCAGTTGAAGGATCTAAAGGTTTTCGCCGTTATCCGTGTGATATTCCAACTTGCTGAAGAGATCCCTTGCTTTTCTGCTGTTGTTGTAGCTCTGCTTGCTGAGCCAAAGCCCAGGATTGATTATACTCTGAAAGCTGTTGGTGGAAGTTTAACAGCTATTCCTGGAATCTCAGATATGATTGATGATACTGTGAACTCAATTGTTACTGACATGCTCCAATGGCCTCATAGGATTGTGGTTCCACTTGGTGGTATTCCTGTTGATACCAGTGAACTGGAGCTTAAACCCCAGGGAAAACTTGCACTGACTGTAGTGAAAGCGACTGCTTTAAAGAATATGGAAATGATTGGAAAGTCAGATCCTTATGTAGTTGTGCATATTCGACCATTATTTAAGTATAAAACCAAGGTTATTGATAACAACTTGAATCCTACGTGGAATGAGACATTTGAGTTGATTGCAGAAGACAAGGAGACCCAATCACTCATTCTCGAGGTTCTTGATAAAGATATTGGCCAAGATAAGCGATTGGGAATAGCACAGTTACCACTTATTGATCTAGAAATACAAACTGAAAAGGAGATCGAATTGAGGCTGCTGCCATCACTTGATACACTGAAGGTGAAAGATAAGAAGGATCGAGGAACCTTAACAGTAAAGGTCGTGTATTATCAGTTTAACAAGGAAGAGCAGTTGGCTGCACTAGAAGCAGAAAAAGCGATACTAGAACAAAGGAAGAAACTGAAAGAAGCGGGAGTGATAGGAAGCACAATGGATGCACTAGATGGAGCAGTATCAGTGGTAGGGTCAGGTGTTGGACTGGTTGGTACTGGCGTTGTCGCTGGAGCCGGTCTTGTGGGAAGTGGCATTGGTGCTGGAGCCGGGCTTGTTGGAAGCGGCATCGGTGCTGGAGTTGGCATTGTTGGGAGTGGTCTCGGAGCCGTTGGTAGTGGACTGAGCAAGGCAGGGAAGTTCATGGGAAGGACAATCACAGGTCATAGTGGCTCCAGAAAGAGTGGTTCTTCAACTCCAGTCAATAATGCTCTGGAGAATGGTGGTGGTGCAAAGCCTCTTTGA 1575 0.4394 MGLFSGIFMGVLFGIAFMAGWARMMRYRSCKRIAKAADIKLLGSLNRDDLKKICGDNLPEWISFPVYEQVKWLNKKLTKLWPFVAEAATMVIRESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLTKGQIIMDIDFRWGGDPSIILAVEAALVASIPIQLKDLKVFAVIRVIFQLAEEIPCFSAVVVALLAEPKPRIDYTLKAVGGSLTAIPGISDMIDDTVNSIVTDMLQWPHRIVVPLGGIPVDTSELELKPQGKLALTVVKATALKNMEMIGKSDPYVVVHIRPLFKYKTKVIDNNLNPTWNETFELIAEDKETQSLILEVLDKDIGQDKRLGIAQLPLIDLEIQTEKEIELRLLPSLDTLKVKDKKDRGTLTVKVVYYQFNKEEQLAALEAEKAILEQRKKLKEAGVIGSTMDALDGAVSVVGSGVGLVGTGVVAGAGLVGSGIGAGAGLVGSGIGAGVGIVGSGLGAVGSGLSKAGKFMGRTITGHSGSRKSGSSTPVNNALENGGGAKPL 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00991 524 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 248 IPR039010 -
Pumo7g00991 524 PRINTS C2 domain signature 281 293 IPR000008 -
Pumo7g00991 524 PRINTS C2 domain signature 306 319 IPR000008 -
Pumo7g00991 524 PRINTS C2 domain signature 328 336 IPR000008 -
Pumo7g00991 524 Pfam C2 domain 264 359 IPR000008 -
Pumo7g00991 524 ProSiteProfiles C2 domain profile. 247 365 IPR000008 -
Pumo7g00991 524 CDD SMP_SYT 59 248 - -
Pumo7g00991 524 SMART C2_3c 265 362 IPR000008 -
Pumo7g00991 524 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 249 IPR031468 GO:0008289
Pumo7g00991 524 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 416 IPR045050 GO:0008289
Pumo7g00991 524 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 262 392 IPR035892 -
Pumo7g00991 524 MobiDBLite consensus disorder prediction 498 515 - -
Pumo7g00991 524 Coils Coil 391 418 - -
Pumo7g00991 524 MobiDBLite consensus disorder prediction 496 524 - -
Pumo7g00991 524 Gene3D C2 domain 259 417 IPR035892 -
Pumo7g00991 524 FunFam synaptotagmin-4 isoform X1 259 417 - -
Pumo7g00991 524 CDD C2 266 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00991 Pumo-Chr7 18120071 18130094 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00991 249 350 Lipid Metabolism Gene Families AT3G61300 33.010 5.50e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00991 - - gmx:100777838 877.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00991 7 18120071 18130094 Pumo7g00991 7 18120071 18130094 ECH
Pumo5g01175 5 26359470 26368010 Pumo7g00991 7 18120071 18130094 PCT