Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01175 ATGGGGTTGTTTTCTGGGATTTTTCTGGGGATGGTACTCGGCGTAGCATTGATGGCTGCGTGGCAACGCATGATGACGTATCGTAGCGCCAAGAGAATTACAAAGGCAGTTGACGTTAAACTCCTTGGGTCCCTTAACAGAGAGGATTTAAAGAGAATTTGTGGGGATAATTTTCCTGAATGGATATCTTTTCCTGTATATGAGCAGGTGAAATGGCTAAACAAGCAGCTGTCCAAACTTTGGCCATTTGTGGCAGATGCTGCAACATTGGTGATTAGAGAATCTGTTGAACCGCTATTGGAAGAGTACAGACCACCTGGAATTACTTCATTGAAGTTCAGCAAGCTGTCCCTTGGAAATGTTGCTCCAAAAATTGAAGGTATTCGTGTTCAGAGTCTTAAAAAAGGTCAAATCATAATGGACATTGATTTCCGTTGGGGTGGTGATCCCAATATTGTTTTGGCTGTTGAAGCTGCACTTGTTGCATCAATCCCTATTCAGTTGAAGGATCTCCAGGTTTTCACCATTATCCGTGTTATATTCCAACTTGCTGATGAGATTCCCTGCATTTCTGCTGTTGTTGTTGCCCTACTTGCTGAGCCAAAGCCTAGAATTGATTACACTCTGAAGGCTGTTGGTGGAAGTTTGACTGCACTTCCTGGAATTTCAGATATGATTGATGATACTGTGAACTCAATTGTTACCGATATGCTCCAATGGCCTCATAGGATTGTTGTTCCTCTTGGGGGAATACCTGTTGATACTAGTGAACTGGAGCTTAAACCCCAGGGAACGCTTAGAGTGAATGTAATTAAAGCGAATGACCTAAAGAATATGGAAATGATTGGGAAGTCTGATCCTTATGCAGTGTTGCATATTCGACCACTGTTTAAGGTTAAAACAAAGGTTATTGATAACAACTTGAATCCTGCTTGGAATGAGGTATTTGACTTGATTGCAGAGGACAAGGAGACCCAGTCACTCATTGTCGAGGTTTTTGATAAAGACATTGGGCAAGATAAGCGATTGGGAATAGTAAAATTACCACTTAATGACCTGAAAGCAGAAACTGAAAAGGAGTTTGAATTGAGGCTGCTGTCATCACTTGATACACTGAAAGTGAAAGACAAGAAGGATCGAGGAACCATAACAATAAAGATCTTTTATCACCAATTTAACAAGGAAGAACAGTTGGTTGCACTAGAAGCAGAGAAAAAGATACTAGAAGAAAGGAAGAAACTTAAAGAAGAGGGAGTTATAGGAACTACAATGGATGCGCTAGATGGAGCAGCGACGGTAGTTGGGTCCGGTGTTGGAATGGTTGGTACTGGTGTTACTGCTGGTGTTGGACTTGTGGGGAGTGGAACTGTTACTGGAGCTGGGTTTGTTGGCAGTGGCATTGGTGCCGGAGTTGGTTTTGTCGGCAGCGGTCTTGGTGCAGTTGGTAGTGGACTGAGCAAAGCAGGAAAGTTCATGGGAAGGACAATCACAGGGCAAGGTAGTTCCAGAAGGAGTGGTTCATCTACTCCTGTCAATGTGGAGGAGGCTGGTGGTGGTGCAAAACCTCTGCACCAGTAA 1578 0.4328 MGLFSGIFLGMVLGVALMAAWQRMMTYRSAKRITKAVDVKLLGSLNREDLKRICGDNFPEWISFPVYEQVKWLNKQLSKLWPFVADAATLVIRESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLKKGQIIMDIDFRWGGDPNIVLAVEAALVASIPIQLKDLQVFTIIRVIFQLADEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTALPGISDMIDDTVNSIVTDMLQWPHRIVVPLGGIPVDTSELELKPQGTLRVNVIKANDLKNMEMIGKSDPYAVLHIRPLFKVKTKVIDNNLNPAWNEVFDLIAEDKETQSLIVEVFDKDIGQDKRLGIVKLPLNDLKAETEKEFELRLLSSLDTLKVKDKKDRGTITIKIFYHQFNKEEQLVALEAEKKILEERKKLKEEGVIGTTMDALDGAATVVGSGVGMVGTGVTAGVGLVGSGTVTGAGFVGSGIGAGVGFVGSGLGAVGSGLSKAGKFMGRTITGQGSSRRSGSSTPVNVEEAGGGAKPLHQ 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01175 525 Pfam C2 domain 264 360 IPR000008 -
Pumo5g01175 525 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 264 391 IPR035892 -
Pumo5g01175 525 CDD SMP_SYT 59 248 - -
Pumo5g01175 525 MobiDBLite consensus disorder prediction 495 512 - -
Pumo5g01175 525 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 249 IPR031468 GO:0008289
Pumo5g01175 525 MobiDBLite consensus disorder prediction 494 525 - -
Pumo5g01175 525 Gene3D C2 domain 259 418 IPR035892 -
Pumo5g01175 525 ProSiteProfiles C2 domain profile. 247 363 IPR000008 -
Pumo5g01175 525 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 248 IPR039010 -
Pumo5g01175 525 Coils Coil 391 418 - -
Pumo5g01175 525 SMART C2_3c 265 362 IPR000008 -
Pumo5g01175 525 CDD C2 266 360 - -
Pumo5g01175 525 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 416 IPR045050 GO:0008289
Pumo5g01175 525 FunFam synaptotagmin-4 isoform X1 259 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01175 Pumo-Chr5 26359470 26368010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01175 249 353 Lipid Metabolism Gene Families AT3G61300 33.019 1.96e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01175 - - gmx:100785209 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g01175 5 26359470 26368010 Pumo7g00991 7 18120071 18130094 PCT