Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00810 ATGTCTTCTCCAAGCAAGCGCCGAGAGATGGACTTGATGAAACTGATGATGAGTGACTACAAGGTGGAGATGATTAATGATGGAATGCAAGAGTTTTATGTGCATTTCCATGGACCCAATGAGAGTCCTTATCATGGAGGTGTGTGGAAAGTGAGAGTTGAGCTGCCAGATGCTTATCCTTATAAATCTCCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATGTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTGATCTTGTCAATGTGTTTGAGGTGTTTCTACCACAACTTCTTCTGTATCCCAATCCATCAGACCCCTTGAATGGAGAAGCTGCAGCTTTAATGATGCGTGATCGAGCCACTTACGAGCAAAGGGTTAAAGGTGTTGATCAATTTTAA 438 0.4155 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVHFHGPNESPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRATYEQRVKGVDQF 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00810 145 FunFam Ubiquitin-conjugating enzyme 5, E2 1 144 - -
Pumo7g00810 145 SMART ubc_7 4 144 - -
Pumo7g00810 145 Pfam Ubiquitin-conjugating enzyme 10 140 IPR000608 -
Pumo7g00810 145 SUPERFAMILY UBC-like 4 140 IPR016135 -
Pumo7g00810 145 CDD UBCc 7 140 IPR000608 -
Pumo7g00810 145 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 29 136 - -
Pumo7g00810 145 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Pumo7g00810 145 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 145 IPR000608 -
Pumo7g00810 145 Gene3D Ubiquitin Conjugating Enzyme 1 144 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00810 Pumo-Chr7 14254622 14257042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00810 3 115 Miscellaneous Gene Families AT3G17000 23.140 2.87e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00810 K10576 - gmx:100804969 295.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00810 7 14254622 14257042 Pumo7g00810 7 14254622 14257042 ECH
Pumo5g00252 5 5971778 5974780 Pumo7g00810 7 14254622 14257042 PCT