Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00252 ATGATGAGTGATTACAAGGTGGAGATGATTAATGATGGAATGCAAGAATTTTATGTGCAATTCCATGGACCCAATGACAGTCCTTATCATGGTGGTGTGTGGAAAGTAAGAGTTGAGTTGCCTGATGCTTATCCTTATAAATCTCCTTCCATTGGCTTTGTCAACAAGATCTATCACCCAAATGTTGATGAGATGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTTGATCTTGTCAATGTGTTTGAGGTGTTTCTACCACAACTTCTGCTGTATCCTAATCCATCAGACCCCTTGAATGGAGAAGCTGCAGCTTTAATGATGCGTGACCGACCAAGTTATGAACAAAGGGTTAAAGGTATTGATCCTTTCTGTTTTTCATTTTCTAAATATTCATTTCTTGCATTAGTTATATGCTCTCATTCCTATGTCTGCGTCACAGACTTGCAATGTTTTCTTTGCAGTTTTTTATTTTGGTCTTCCTCATGCCAGCCACAATCAAAATGTAAACCAAGAGGCACACTTGAACTAACATTTTAG 558 0.3871 MMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRPSYEQRVKGIDPFCFSFSKYSFLALVICSHSYVCVTDLQCFLCSFLFWSSSCQPQSKCKPRGTLELTF 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00252 185 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 133 IPR000608 -
Pumo5g00252 185 FunFam Ubiquitin-conjugating enzyme 5, E2 1 138 - -
Pumo5g00252 185 CDD UBCc 1 125 IPR000608 -
Pumo5g00252 185 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 14 121 - -
Pumo5g00252 185 Pfam Ubiquitin-conjugating enzyme 3 125 IPR000608 -
Pumo5g00252 185 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 58 74 IPR023313 -
Pumo5g00252 185 Gene3D Ubiquitin Conjugating Enzyme 1 127 IPR016135 -
Pumo5g00252 185 SMART ubc_7 1 133 - -
Pumo5g00252 185 SUPERFAMILY UBC-like 4 125 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00252 Pumo-Chr5 5971778 5974780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00252 10 127 Miscellaneous Gene Families AT3G17000 25.410 3.15e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00252 K10576 - gmx:100812138 267.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00252 5 5971778 5974780 Pumo5g00252 5 5971778 5974780 ECH
Pumo5g00252 5 5971778 5974780 Pumo7g00810 7 14254622 14257042 PCT