Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00394 ATGATAATAGGTGGCATCTTAGGCAACAGGGGCCACAAGATAAAGGGGACTGTGGTGTTGATGCCCAAGAATGTGTTGGACTTCAACGCCATAACGTCGGTGGGCAAAGGCGGTGTTGTTGACACTGCCACCGATATCTTGGGCACTGGCGCCAGCCTAATTGGTAATGTAATTGATGCTGCCACTGCCTTCGTGGGTCGTAGCGTCTCACTGCAGTTGATCAGTGCTACTCAGACTGATGTTAGTAAGTCTGCATGGATGACTGATGATGAATTTGCAAGAGAGATGATTGCTGGTGTAAACCCAAATGTAATTCGTAGTCTTCAAGAGTTCCCACCAAAAAGCACGCTTGATCCCACACTCTATGGTGACCAAACTAGTACCATAACAAAAGAACAGTTGGAGATTAACTTGGGTGGGGTCACAGTAGAAGAGGTCTCTTCACTAATAAATCACTATGAAATCCTTCCTCACCGCTATTTTGGGCCAAGTCCTTCAAACATGTCTATGTTTACCTTTTCTTTGTTGAGCGTTGATAGCAATACAAAGATGATAATAGGTGGTATCTTAGGCAACAAGGGCAATAAGATAAAGGGCACTGTGGTGTTGATGCCCAAGAATGTTTTGGACTTCAACGCCATAACGTCCATCGGTAAAGGCGGTGTTATTGACACTGCCACCGGTATCTTGGGCACTGGCGTCAGCTTAGTTGGTGGAGTTATTGATACTGCCACTTCCTTCTTAGGCCGTAATGTCGCCATCCAATTGATCAGTGCTACTCAGCCTGATGTTAGTAAGTCTGCATGGATGACTGATGAAGAATTTGCAAGAGAGTTGATTGCTGGTGTAAACCCAAATGTGATCCGTCGTCTTCAAGAATTCCCCCCAAAGAGCACGCTTGATCCCACACTCTTTGGTGATCAAACTAGTACCATAACAAAAGAACAGTTGGAGATTAACATGGGTGGGGTCACAGTAGAAGAGGCACTTGGTGCTCAGAGATTATTCATATTAGATTACCAAGATGCATTCATCCCTTATTTGACGAGGATAAACAGCCTACCTAAAGCAAAAGCTTATGCCACAAGGACAATCCTGTTCTTGAAAGATGATGGGACTTTGAAGCCACTTGCTATCGAATTAAGCAAGCCACATCCAGATGGAGATAACTTAGGTGCTGTTAGTAAAGTGGTGTTGCCTGCAGCTGAAGGTGTTGAAAGCACAATTTGGCTATTGGCCAAGGCTCATGTAATTGTAAATGACTCTGGCTATCATCAGCTAGTGAGCCATTGGTTAAATACTCATGCTGTGATGGAGCCATTTGCCATAGCAACAAACAGGCAACTCAGTGTGCTTCACCCCATTTATAAGCTTCTTTATCCTCACTACCGTGACACCATTAATATCAATGGACTTGCTAGGCAGTCCCTGATCAATGCAGGGGGCATTATAGAGCAATCATTTTTGCCCGGAAAGTACTCTATTGAGATGTCTTCAGCCGTTTACAAGAATTGGGTTTTCACTGACCAAGCATTACCAGCAGATCTCGTCAAGAGAGGATTGGCAGTTGAGGATCCCTCTGTTCCCCATGGCCTTCGCCTTTTGATAGAGGACTACCCTTATGCTGTTGATGGACTAGAAATATGGGATGCTATCCAGACATGGGTTAAGGACTATGTATCCTTGAATTACCCAACAGATGTGGCAGTTCAACAAGATACTGAACTGCAAGCATGGTGGAAGGAAGCTGTGGAGAAGGGTCATGGTGACTTAAAAGATAAGCCTTGGTGGCCTAAAATGCAGACTATTGGAGACCTCATTCAATCCTGCTCTATTATCATATGGACAGCTTCAGCTCTCCATGCTGCTGTTAATTTTGGACAATATCCTTATGGAGGTTATATCGTGAACCGTCCAACTCTAGCCAGAAGGTTTATCCCAGAAGAAGGAACCCCAGAATATGATGAGATGGTGAAGAGTCCTCAAAAGGCTTATCTGAGAACAATCACACCTAAGTATGAGACCCTTATTGACATTTCAGTGATAGAGATATTGTCAAGGCACGCTTCTGATGAGATCTACCTTGGGCATAGGGATACTGATGACTGGACAACTGATAAGAAGGCAGTAGAAGCTTTCAAAAAATTTGGAAACAAACTGACAGAAATTGAGGGAAAAATCAATGCAAGGAACAGTGATCCAAGTCTGAGAAACCGACATGGGCCAGTTCAGCTGCCATACACATTGCTCCATCGTTCAAGTGAGGAAGGGTTGACTTTCAAAGGAATTCCCAACAGTATCTCTATCTAA 2310 0.4403 MIIGGILGNRGHKIKGTVVLMPKNVLDFNAITSVGKGGVVDTATDILGTGASLIGNVIDAATAFVGRSVSLQLISATQTDVSKSAWMTDDEFAREMIAGVNPNVIRSLQEFPPKSTLDPTLYGDQTSTITKEQLEINLGGVTVEEVSSLINHYEILPHRYFGPSPSNMSMFTFSLLSVDSNTKMIIGGILGNKGNKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGTGVSLVGGVIDTATSFLGRNVAIQLISATQPDVSKSAWMTDEEFARELIAGVNPNVIRRLQEFPPKSTLDPTLFGDQTSTITKEQLEINMGGVTVEEALGAQRLFILDYQDAFIPYLTRINSLPKAKAYATRTILFLKDDGTLKPLAIELSKPHPDGDNLGAVSKVVLPAAEGVESTIWLLAKAHVIVNDSGYHQLVSHWLNTHAVMEPFAIATNRQLSVLHPIYKLLYPHYRDTININGLARQSLINAGGIIEQSFLPGKYSIEMSSAVYKNWVFTDQALPADLVKRGLAVEDPSVPHGLRLLIEDYPYAVDGLEIWDAIQTWVKDYVSLNYPTDVAVQQDTELQAWWKEAVEKGHGDLKDKPWWPKMQTIGDLIQSCSIIIWTASALHAAVNFGQYPYGGYIVNRPTLARRFIPEEGTPEYDEMVKSPQKAYLRTITPKYETLIDISVIEILSRHASDEIYLGHRDTDDWTTDKKAVEAFKKFGNKLTEIEGKINARNSDPSLRNRHGPVQLPYTLLHRSSEEGLTFKGIPNSISI 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00394 769 FunFam Lipoxygenase 268 402 - -
Pumo7g00394 769 SUPERFAMILY Lipoxigenase 195 769 IPR036226 -
Pumo7g00394 769 FunFam Lipoxygenase 404 768 - -
Pumo7g00394 769 PANTHER LIPOXYGENASE 80 148 IPR000907 GO:0016702|GO:0034440|GO:0046872
Pumo7g00394 769 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 264 769 IPR013819 GO:0016702|GO:0046872
Pumo7g00394 769 Gene3D - 108 159 - -
Pumo7g00394 769 Gene3D - 291 421 - -
Pumo7g00394 769 ProSitePatterns Lipoxygenases iron-binding region signature 1. 425 439 IPR020833 GO:0016702|GO:0046872
Pumo7g00394 769 SMART LH2_4 12 132 IPR001024 GO:0005515
Pumo7g00394 769 SMART LH2_4 195 307 IPR001024 GO:0005515
Pumo7g00394 769 PRINTS Lipoxygenase signature 407 424 IPR013819 GO:0016702|GO:0046872
Pumo7g00394 769 PRINTS Lipoxygenase signature 425 442 IPR013819 GO:0016702|GO:0046872
Pumo7g00394 769 PRINTS Lipoxygenase signature 445 465 IPR013819 GO:0016702|GO:0046872
Pumo7g00394 769 PRINTS Plant lipoxygenase signature 71 87 IPR001246 GO:0016491
Pumo7g00394 769 PRINTS Plant lipoxygenase signature 110 129 IPR001246 GO:0016491
Pumo7g00394 769 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 1 163 IPR013819 GO:0016702|GO:0046872
Pumo7g00394 769 ProSitePatterns Lipoxygenases iron-binding region signature 2. 452 462 IPR020834 GO:0016702|GO:0046872
Pumo7g00394 769 Gene3D PLAT/LH2 domain 5 107 - -
Pumo7g00394 769 Gene3D PLAT/LH2 domain 188 290 - -
Pumo7g00394 769 Gene3D - 422 767 - -
Pumo7g00394 769 SUPERFAMILY Lipoxigenase 63 146 IPR036226 -
Pumo7g00394 769 Pfam Lipoxygenase 264 751 IPR013819 GO:0016702|GO:0046872
Pumo7g00394 769 Pfam Lipoxygenase 78 146 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00394 Pumo-Chr7 5674412 5685806 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00394 266 769 Acyl Lipid Metabolism Gene Families AT1G55020 63.762 0.0 690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00394 K15718 - gmx:547835 944.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04131 4 81956998 81960061 Pumo7g00394 7 5674412 5685806 PCT