Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04131 ATGCTTGGGGTTGGGGGTCTTTTCAATAGGGGACATAAGATAAAAGGGACAGTGGTGTTGATGCGCAAGAATGTGTTGGACGTGAATAGCGTAACCAGTGTTGGGGGAATTATTGGTGGAGGTCTGGACATACTTGGTTCAACACTCGATACTCTTACTGCCTTCTTGGGCCGATCTGTCTCTCTCCAGCTTATTAGTGCTACCAAAGCTGATGCCAACGGAAAAGGGAAACTTGGAAAGCCTAACTTTCTGGAAGGTGTCCTTACTTCATTGCCAACTCTGAGACCAGGCCAATCTGCATTCAAAATTCATTTTGAATGGGATGATGAGAGTGGAATTCCTGGAGCTTTTTATATCAAGAATTTTATGCAAACTGAGTTCTTCCTTGTGAGTTTGACTCTTGAAGACATCCCAAACCATGGAAGCATCCACTTTGTTTGCAACTCGTGGATTTACAATGCCAAACACTTCAAAAGTGACCGCATTTTCTTTGTCAACCAGACATATCTTCCAAGTGAAACACCAGCTCCATTAGTCAAATATAGAGAAGAAGAGTTGCATAATTTAAGAGGAGATGGAACTGGGGAACGCAAAGAGTGGGAAAGGATCTATGATTATGATGTCTACAATGATTTAGGCAATCCGGATAAAGGTGAAAATCATGCCCGTCCTATTCTTGGAGGAAATGACACCTTTCCTTATCCTCGTAGGGGGAGAACTGGTAGAACACCAACAAGGAAAGATCCCAATAGTGAGAGTAGGAGCAATGATGTTTATCTTCCAAGAGATGAAGCTTTTGGACACTTGAAGTCATCAGACTTTCTTACTTATGGACTGAAATCCGTATCTCAAAATGTTCTTCCATTATTGCAATCTGCTTTTGATTTGAATTTCACACCCCATGAGTTTGATAGCTTTGATGAAGTTCATAGACTCTATTCGGGCGGAATTAAGCTGCCAACAGATATTATTAGCAAGATTAGTCCACTACCCGTGATTAAGGAAATCTTCCGAACTGATGGTGAACAGGCCCTCAAGTTTCCTCCTCCTAAAGTAATTCAAGCAGTGAGTAAGTCTGCATGGATGACTGATGAAGAATTTGCAAGAGAAATGCTTGCTGGTGTAAATCCAAACTTGATTCGTTGTCTTCAGGAGTTCCCTCCACGAAGCAAGCTAGATAGTCACCTCTATGGTGATCATACTAGTCAAATAACCAAAGAACACCTACAGCCTAACTTAGAAGGGCTCACTGTAGATGAGGCAATTCAAAACAAGAGACTGTTCCTACTAGATCATCATGACTCAATCATGCCATATTTGAGGCGAATAAACGCAACCTCCACAAAGGCTTATGCTACTAGAACCATCCTTTTCCTGAAAAATGACCGAACTTTAAGGCCACTTGCCATTGAATTGAGTTTGCCACATCCTCAGGGAGATCAATCTGGTGTTGTTAGTCAAGTTTTTCTACCTGCAGAGGAAGGCGTTGAAAGTTCTATTTGGCTACTAGCAAAGGCTTATGTAATTGTGAATGACTCGTGCTATCATCAACTTGTCAGCCATTGGTTAAATACTCATGCAGTTGTTGAGCCATTCATCATAGCAACAAACAGGCATCTCAGTGTTGTTCACCCTATTTATAAACTCCTGCACCCTCACTATCGTGACACCATGAACATAAATGCCCTTGCTCGGCAATCACTGGTCAATGACGGTGGCATTATAGAACAAACATTTTTGTGGGGAAGGTATTCTATGGAAATGTCTGCTGTAGTTTACAAGGATTGGGTTTTTACAGATCAAGCATTGCCTGCTGATCTTATAAAAAGAGGAATGGCAATTGAGGATCCAGCGTGCCCTCATGGCATTCGCCTTGCGATAGAGGACTACCCTTATGCTGTTGATGGACTTGAGATATGGGATGCTATCAAGACATGGGTCCATGAATACGTTTTCTTGTACTACAAATCAGATGACACACTTAGAGAAGATCCTGAACTCCAAGCCTGGTGGAAAGAACTCGGTAGAGGTGGGTCATGGAGACAAGAAAAATGA 2055 0.4204 MLGVGGLFNRGHKIKGTVVLMRKNVLDVNSVTSVGGIIGGGLDILGSTLDTLTAFLGRSVSLQLISATKADANGKGKLGKPNFLEGVLTSLPTLRPGQSAFKIHFEWDDESGIPGAFYIKNFMQTEFFLVSLTLEDIPNHGSIHFVCNSWIYNAKHFKSDRIFFVNQTYLPSETPAPLVKYREEELHNLRGDGTGERKEWERIYDYDVYNDLGNPDKGENHARPILGGNDTFPYPRRGRTGRTPTRKDPNSESRSNDVYLPRDEAFGHLKSSDFLTYGLKSVSQNVLPLLQSAFDLNFTPHEFDSFDEVHRLYSGGIKLPTDIISKISPLPVIKEIFRTDGEQALKFPPPKVIQAVSKSAWMTDEEFAREMLAGVNPNLIRCLQEFPPRSKLDSHLYGDHTSQITKEHLQPNLEGLTVDEAIQNKRLFLLDHHDSIMPYLRRINATSTKAYATRTILFLKNDRTLRPLAIELSLPHPQGDQSGVVSQVFLPAEEGVESSIWLLAKAYVIVNDSCYHQLVSHWLNTHAVVEPFIIATNRHLSVVHPIYKLLHPHYRDTMNINALARQSLVNDGGIIEQTFLWGRYSMEMSAVVYKDWVFTDQALPADLIKRGMAIEDPACPHGIRLAIEDYPYAVDGLEIWDAIKTWVHEYVFLYYKSDDTLREDPELQAWWKELGRGGSWRQEK 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04131 684 Pfam PLAT/LH2 domain 67 164 IPR001024 GO:0005515
Pumo4g04131 684 Gene3D - 494 683 - -
Pumo4g04131 684 PRINTS Plant lipoxygenase signature 135 153 IPR001246 GO:0016491
Pumo4g04131 684 PRINTS Plant lipoxygenase signature 300 321 IPR001246 GO:0016491
Pumo4g04131 684 PRINTS Plant lipoxygenase signature 385 404 IPR001246 GO:0016491
Pumo4g04131 684 PRINTS Plant lipoxygenase signature 161 182 IPR001246 GO:0016491
Pumo4g04131 684 PRINTS Plant lipoxygenase signature 451 475 IPR001246 GO:0016491
Pumo4g04131 684 PRINTS Plant lipoxygenase signature 233 252 IPR001246 GO:0016491
Pumo4g04131 684 PRINTS Plant lipoxygenase signature 345 361 IPR001246 GO:0016491
Pumo4g04131 684 PRINTS Plant lipoxygenase signature 200 216 IPR001246 GO:0016491
Pumo4g04131 684 Gene3D - 170 269 - -
Pumo4g04131 684 Pfam Lipoxygenase 178 676 IPR013819 GO:0016702|GO:0046872
Pumo4g04131 684 Gene3D - 359 493 - -
Pumo4g04131 684 SMART LH2_4 12 166 IPR001024 GO:0005515
Pumo4g04131 684 ProSitePatterns Lipoxygenases iron-binding region signature 1. 516 530 IPR020833 GO:0016702|GO:0046872
Pumo4g04131 684 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 168 684 IPR013819 GO:0016702|GO:0046872
Pumo4g04131 684 FunFam Lipoxygenase 170 269 - -
Pumo4g04131 684 Gene3D - 270 358 IPR027433 -
Pumo4g04131 684 MobiDBLite consensus disorder prediction 215 258 - -
Pumo4g04131 684 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 11 169 IPR036392 GO:0005515
Pumo4g04131 684 PRINTS Lipoxygenase signature 498 515 IPR013819 GO:0016702|GO:0046872
Pumo4g04131 684 PRINTS Lipoxygenase signature 516 533 IPR013819 GO:0016702|GO:0046872
Pumo4g04131 684 PRINTS Lipoxygenase signature 536 556 IPR013819 GO:0016702|GO:0046872
Pumo4g04131 684 MobiDBLite consensus disorder prediction 241 258 - -
Pumo4g04131 684 PANTHER LIPOXYGENASE 12 675 IPR000907 GO:0016702|GO:0034440|GO:0046872
Pumo4g04131 684 FunFam Lipoxygenase 360 493 - -
Pumo4g04131 684 SUPERFAMILY Lipoxigenase 170 678 IPR036226 -
Pumo4g04131 684 ProSitePatterns Lipoxygenases iron-binding region signature 2. 543 553 IPR020834 GO:0016702|GO:0046872
Pumo4g04131 684 CDD PLAT_LH2 12 166 IPR042057 -
Pumo4g04131 684 Gene3D PLAT/LH2 domain 4 169 - -
Pumo4g04131 684 ProSiteProfiles PLAT domain profile. 40 165 IPR001024 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04131 Pumo-Chr4 81956998 81960061 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04131 1 678 Acyl Lipid Metabolism Gene Families AT1G55020 58.551 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04131 K15718 - gmx:547869 1264.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04131 4 81956998 81960061 Pumo7g00394 7 5674412 5685806 PCT