Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00346 ATGACTGATAGGGTCCACCCTTCTGCCAAAACCACCACCAACGGCGCCCCCAAGCCGACATTCCCCTCCACCAAATCCCAGCTTTCCGGCGCCAACCGCCCCACCTACCGCCCCCAACCGCCGCACCACCGCCGCCGCAGCCGCGGTTGCGCCTCCACCCTCTGCTGCTACCTCCTCCTGATCCTCCTCTTCCTCCTCCTCCTCATCGGAGCCGCCGGCACCGTCCTCTACTTCCTCTACCGCCCCCAGCGCCCCACGTTCTCCGTCACCTCCCTCAAACTCTCCTCCTTCAACCTCACCGCTCCCTCCACCATCAACGCCAAGTTCGACCTCACACTCTCAATCACAAACCCCAACGACAAGATCATCTTCTCCTACGACCCCACCTCCGTCTCCCTCCTCTACGGCGATACCTCCCTCGCCGGCACCACCATCCCCTCCTTCCTCCACCGCCAGAGGAACACCACCGTGCTCGAAGCTTATGTTGCCAGCACAGAGGAAGCGGTGGATACTGACGCCGCGATGGAGCTGAAGAGGAGCATGAAGGGCAAGAGCGAGGTGGCGCTGAAGGTGAAGTTGGAGACCAAGGTGGAGGCCCAGATGGGCGTGTTCCAGACGCCGCGCGTCGGAATCACGGTTCTGTGCGACGGCATCGCCGTGTCTCTCCCCGACGGGGAGAAACCGGCGACGGCTTCCGCAGAGAATGCGGAGTGCCAAGTGGATGTGAGGTTCAAGGTCTGGAAATGGACTGTAGGATGGTGA 762 0.6247 MTDRVHPSAKTTTNGAPKPTFPSTKSQLSGANRPTYRPQPPHHRRRSRGCASTLCCYLLLILLFLLLLIGAAGTVLYFLYRPQRPTFSVTSLKLSSFNLTAPSTINAKFDLTLSITNPNDKIIFSYDPTSVSLLYGDTSLAGTTIPSFLHRQRNTTVLEAYVASTEEAVDTDAAMELKRSMKGKSEVALKVKLETKVEAQMGVFQTPRVGITVLCDGIAVSLPDGEKPATASAENAECQVDVRFKVWKWTVGW 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00346 253 Pfam Late embryogenesis abundant protein 112 213 IPR004864 -
Pumo7g00346 253 MobiDBLite consensus disorder prediction 1 34 - -
Pumo7g00346 253 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 10 239 - -
Pumo7g00346 253 MobiDBLite consensus disorder prediction 1 47 - -
Pumo7g00346 253 Gene3D - 74 211 - -
Pumo7g00346 253 SUPERFAMILY LEA14-like 64 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00346 Pumo-Chr7 4517814 4518917 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00346 36 237 EF-hand Containing Proteins AT5G21130 24.528 2.42e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00346 - - gmx:102669753 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00346 7 4517814 4518917 Pumo7g00346 7 4517814 4518917 ECH
Pumo4g04155 4 82163870 82165347 Pumo7g00346 7 4517814 4518917 PCT