Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00281 ATGATTTCCTTCTCTGTTTCTGGTTTCCCTCCATTCCCACTCCGCAGGGCATATCCAAGAGTAAGTGCAAGCTTTGGCATTGACACCCCCAATTCAGCCAACCCTAATGGCTCGGATGCTGAATTTGAAGAAGAATTTCGAAAGGGAAAGGCTAGTGGGAGAGTGATGGGTGGTGGTGGTGGTGGTGGTGGAGTTGTTATTGGAAGTAAGAAGAAGGCGAAGGAGAAAGTTCAATGGGTTTGCAGCAATTGTGGATACAGTGCAGGACAATGGTGGGGTGTGTGTCGATCATGCAATGTATCTGGTACTATGAAAGAGGCTAAATTCAGTGATGCTGATACTATGGTTAGTGGGTTTTCAGTTTTGGAGGATGGTGTGGGGTCTTGGCTACCGCAACAGGAAGGTGAGATGCGTCCCTTGAAATTGGCAGAGGTAAACAGGGGAGTTGATCATCACCATTGGAGAATTCCTTTGTCTGGTCCATTTGGAGATGAAGTTTCCACAGTTCTTGGTGGTGGTCTCGTACCAGGCTCATTGACTTTCATTGGTGGTGATCCTGGTGTTGGGAAGAGTACTCTTTTGTTGCAGATAGCTGCAATTATTGCAGAAGGGCACAAAGATGGTGAAGCATCTCCAGTTATATATGTCTCTGGTGAAGAGAGTGTTGAGCAAATTGGTAACAGAGCAGATCGCCTTAGGATTGAATCAGATATTTATTTATATTCAAGTAATGATGTTGAGGACATACTGAAGAAAGTTCAGTATCTCTCCCCCGCAGCTCTAATTGTTGATTCAATACAAACTGTTTATTTAAAAGGAGTAATGGGAAGTCCTGGAGGGATTATGCAGGTGAAAGAATGTACTTCAGCTTTAATGCGATTTGCGAAGAAGACAAACATCCCGGTTCTTTTGATTGGACATGTGACAAAATCTGGAGACATTGCAGGACCTCGTGTCTTGGAGCATATTGTTGATGTTGTTTTGTATATGGAAGGCGAGAAGTACTCTTCTCATCGTTTGCTTCGAGCTGTGAAAAATCGATTTGGATCCACTGATGAGCTTGGAGTTTTTGAGATGTCACATTCAGGACTTCAAGCTGTCTCAAATGCCAGTGAAATGTTTCTCAGTGAGCAGCACTTGGATTCAGAAATTTTAGCTGGACTAGCTGTTGCTGTAATCATGGATGGGTCCCGGACATTCCTTATTGAAATTCAGGCACTTTGTCTTTCTGGTTCATGGTCATCAGATTCAAGGCAAGTTAATGGGATTCAACCAAAGAGAGCTGATATGATCATATCTGTTCTAATAAAGCAAGCAGGTCTTCGTGTCCAAGAACATGCTGTGTTTTTGAATGTTGTTCATGGATTGAGACTTACTGAGACTGCAGGAGATCTTGCTATAGCAGCAGCAATTTGCAGCAGTTGCTTGGAAATCCCTATTCCAAAAGACATTGCATTCATTGGTGAAATTGGCCTTGGTGGTGAGCTTCGCATGGTGAGCATGTTCTTTGTGATGTTAATGTTGCTTCAGTACCATAAAGATGATGAACTAATGATAAAAATTATGCGTCTATATATGACGCATAAAACTGTTCTTTGTTATTTTATTTGCATTCTTATTTATGTGATGATACAGGTTCCTAGAATGGAGAAAAGGGTATATACCGTTGCGAAATTGGGTTTCAGAATGTGTATAGTACCCAAGGTGGCTGAAAAAGCTTTAGGAACTGAAGGTTTTGAAAAGATGAAAGTTGTTGGTTGCAGGAATCTGAAAGAGGTTATTAACATTGTATTTCCCAATCTAATAAGAAGCTAG 1815 0.4165 MISFSVSGFPPFPLRRAYPRVSASFGIDTPNSANPNGSDAEFEEEFRKGKASGRVMGGGGGGGGVVIGSKKKAKEKVQWVCSNCGYSAGQWWGVCRSCNVSGTMKEAKFSDADTMVSGFSVLEDGVGSWLPQQEGEMRPLKLAEVNRGVDHHHWRIPLSGPFGDEVSTVLGGGLVPGSLTFIGGDPGVGKSTLLLQIAAIIAEGHKDGEASPVIYVSGEESVEQIGNRADRLRIESDIYLYSSNDVEDILKKVQYLSPAALIVDSIQTVYLKGVMGSPGGIMQVKECTSALMRFAKKTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYMEGEKYSSHRLLRAVKNRFGSTDELGVFEMSHSGLQAVSNASEMFLSEQHLDSEILAGLAVAVIMDGSRTFLIEIQALCLSGSWSSDSRQVNGIQPKRADMIISVLIKQAGLRVQEHAVFLNVVHGLRLTETAGDLAIAAAICSSCLEIPIPKDIAFIGEIGLGGELRMVSMFFVMLMLLQYHKDDELMIKIMRLYMTHKTVLCYFICILIYVMIQVPRMEKRVYTVAKLGFRMCIVPKVAEKALGTEGFEKMKVVGCRNLKEVINIVFPNLIRS 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00281 604 PANTHER DNA REPAIR PROTEIN RADA 48 509 - -
Pumo7g00281 604 NCBIfam DNA repair protein RadA 73 501 IPR004504 GO:0003684|GO:0005524|GO:0006281
Pumo7g00281 604 FunFam DNA repair protein RadA 159 365 - -
Pumo7g00281 604 FunFam DNA repair protein radA isogeny 383 506 - -
Pumo7g00281 604 Pfam Subunit ChlI of Mg-chelatase 432 518 - -
Pumo7g00281 604 ProSiteProfiles RecA family profile 1. 155 308 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Pumo7g00281 604 CDD RadA_SMS_N 79 367 - -
Pumo7g00281 604 SUPERFAMILY Ribosomal protein S5 domain 2-like 345 505 IPR020568 -
Pumo7g00281 604 PRINTS DNA repair protein radA signature 264 288 - -
Pumo7g00281 604 PRINTS DNA repair protein radA signature 81 105 - -
Pumo7g00281 604 PRINTS DNA repair protein radA signature 303 331 - -
Pumo7g00281 604 PRINTS DNA repair protein radA signature 415 438 - -
Pumo7g00281 604 PRINTS DNA repair protein radA signature 338 364 - -
Pumo7g00281 604 PRINTS DNA repair protein radA signature 168 196 - -
Pumo7g00281 604 Pfam AAA domain 169 312 - -
Pumo7g00281 604 Pfam Rubredoxin metal binding domain 79 106 IPR041166 -
Pumo7g00281 604 Gene3D - 386 599 IPR014721 -
Pumo7g00281 604 SMART AAA_5 176 334 IPR003593 GO:0016887
Pumo7g00281 604 Gene3D - 164 372 IPR027417 -
Pumo7g00281 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 359 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00281 Pumo-Chr7 3345523 3352591 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00281 K04485 - gmx:100794165 932.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00281 7 3345523 3352591 Pumo7g00281 7 3345523 3352591 ECH
Pumo4g04175 4 82647536 82656195 Pumo7g00281 7 3345523 3352591 PCT