Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04175 ATGACGAGGCTCCTTAGAACCATCTTCATCGCCCACAAGCTCCACCTCCGCAACCCCAAATGCATTTTCCCACCTCTCCTTTCTCACTACTCCTCCACGGCCACAGATTCCACCGAAGCCAACGAGGCCCAGAAACCAACAAACCAAACCAGCACCAGCAGTTGGAGCATGTTCGGAAACGCCTACGACCGACCAGTCGCGCAGCGCGAGCAAAGCGATCACAGCGACGGAGACGAAAACCCTAGCAGCGGCGGGAGGGCAATGAGTGTAGCATCAGTGGCGAAGATAAAGGGAAACGGGAAGGTGAAAACTCAGTGGGTGTGCTGCAACTGCGGCCACACAACAGGGAAATGGTGGGGGCAATGCCCCGAATGCCAGATGGTTGGCTCAATGAATGAGTTTCGTGAGAGCAAATTAGCTGACAAGTCCAGAGGTGGGTTAGCAGTTTCCGAGGATGCAGTGGGCTTGTGGCTCCCAAAACGACCCGAAGAGTTGCGCCCCCTCAAATTGGAAGAGGTGAACCGTGGATTCAATTACCAGCAATGGAGAATTCCTTTGTCTGGTTCTTTTGGAAATGAAGTTTCTTCAGTGCTTGGGGGAGGTCTTGTACCAGGTTCTTTAACTTTAGTTGGTGGTGATCCTGGTATTGGGAAAAGTACTCTGCTGTTGCAGATTGCAGCAATGATAGCAAAAGAATGCAGTGATGATGAAGGACCTCCAGTTGTATATGTCTCTGGCGAAGAGAGCCTTCAGCAAATTGGTGTTAGAGCAGATCGCCTTGGGATTAAGTCCAATATTTATTTATATTCAAGTACAGATATTGAGGACATATTGATGAAAACTCATGGTCTATCCCCTCGCGCTCTGGTGGTTGATTCAATACAAACTGTTTACCTGAAAACAATAATAGGAAGTGCTGGAGGGATTATGCAGGTAAAGGAATGTACTACAGCTTTGATGCGATTTGCAAAAACAACTAACATCTCAGTTTTTTTGATTGGACATGTAACCAAATCTGGAGACATAGCGGGACCTCGTGTCTTGGAGCATATCGTTGATGTTGTTTTGTATATGGAAGGCGAGAAGTACTCTCCATATCGAATGCTTCGGGCTGTGAAAAATCGGTTTGGATCCACTGATGAGCTTGCAGTTCTTGAGATGTCACAGTCAGGACTCCAGGCTGTTTCAAATGCCAGTGAAATGTTTCTCACTCAACAACACTCCAATTCAAATGTTTTAGCTGGGCTTGCTATTGCTGTAATAATGGATGGTACAAGAACTTTTTTAATTGAAATTCAGGCACTTTGCCTTACACATTGCCCAGTTTCGAGTTCACTATCTAATGGGATCAATGCAAACAAAGCTAATATTATTAAATGTGTACTTATAAAGCAAGCAGGCCTCCATCTCCAAGATAATGCTGTGTTTTTGAATGTTGTTAGTGGATTGACAGTGACAGAGACTGCTGGAGATCTTGCAATAGCAGCTGCAATTTGCAGCAGTTTCTTGGAGTTCCCAATTCCAGAGGGGACTGCATTCATTGGTGAAATTGGCCTTGGTGGAGAGCTTCGCATGGTTCCTAGAATTGATAAAAGGGTTAACACATTGGCGAAGTTGGGTTACAGAATGTGTGTAGTGCCAAAGCAAGCTGAAAAACATTTAGAAACCGAAGGTCTAGGAAAGATGAAAGTTGTAGGTTGCAAGGATCTGAAAGAGGTTATCAACGCTGTATTCAATAGAGATAATTAA 1749 0.4511 MTRLLRTIFIAHKLHLRNPKCIFPPLLSHYSSTATDSTEANEAQKPTNQTSTSSWSMFGNAYDRPVAQREQSDHSDGDENPSSGGRAMSVASVAKIKGNGKVKTQWVCCNCGHTTGKWWGQCPECQMVGSMNEFRESKLADKSRGGLAVSEDAVGLWLPKRPEELRPLKLEEVNRGFNYQQWRIPLSGSFGNEVSSVLGGGLVPGSLTLVGGDPGIGKSTLLLQIAAMIAKECSDDEGPPVVYVSGEESLQQIGVRADRLGIKSNIYLYSSTDIEDILMKTHGLSPRALVVDSIQTVYLKTIIGSAGGIMQVKECTTALMRFAKTTNISVFLIGHVTKSGDIAGPRVLEHIVDVVLYMEGEKYSPYRMLRAVKNRFGSTDELAVLEMSQSGLQAVSNASEMFLTQQHSNSNVLAGLAIAVIMDGTRTFLIEIQALCLTHCPVSSSLSNGINANKANIIKCVLIKQAGLHLQDNAVFLNVVSGLTVTETAGDLAIAAAICSSFLEFPIPEGTAFIGEIGLGGELRMVPRIDKRVNTLAKLGYRMCVVPKQAEKHLETEGLGKMKVVGCKDLKEVINAVFNRDN 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04175 582 FunFam DNA repair protein radA isogeny 411 581 - -
Pumo4g04175 582 FunFam DNA repair protein RadA 180 393 - -
Pumo4g04175 582 SUPERFAMILY Ribosomal protein S5 domain 2-like 373 580 IPR020568 -
Pumo4g04175 582 MobiDBLite consensus disorder prediction 37 56 - -
Pumo4g04175 582 PANTHER DNA REPAIR PROTEIN RADA 50 579 - -
Pumo4g04175 582 SMART AAA_5 204 362 IPR003593 GO:0016887
Pumo4g04175 582 CDD RadA_SMS_N 106 395 - -
Pumo4g04175 582 PRINTS DNA repair protein radA signature 292 316 - -
Pumo4g04175 582 PRINTS DNA repair protein radA signature 108 132 - -
Pumo4g04175 582 PRINTS DNA repair protein radA signature 196 224 - -
Pumo4g04175 582 PRINTS DNA repair protein radA signature 442 465 - -
Pumo4g04175 582 PRINTS DNA repair protein radA signature 366 392 - -
Pumo4g04175 582 PRINTS DNA repair protein radA signature 331 359 - -
Pumo4g04175 582 NCBIfam DNA repair protein RadA 101 572 IPR004504 GO:0003684|GO:0005524|GO:0006281
Pumo4g04175 582 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 387 IPR027417 -
Pumo4g04175 582 Gene3D - 193 393 IPR027417 -
Pumo4g04175 582 Pfam Rubredoxin metal binding domain 106 133 IPR041166 -
Pumo4g04175 582 Pfam Subunit ChlI of Mg-chelatase 463 549 - -
Pumo4g04175 582 Pfam AAA domain 194 340 - -
Pumo4g04175 582 ProSiteProfiles RecA family profile 1. 183 336 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Pumo4g04175 582 MobiDBLite consensus disorder prediction 66 86 - -
Pumo4g04175 582 Gene3D - 400 582 IPR014721 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04175 Pumo-Chr4 82647536 82656195 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04175 K04485 - gmx:100791181 1021.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04175 4 82647536 82656195 Pumo4g04175 4 82647536 82656195 ECH
Pumo4g04175 4 82647536 82656195 Pumo7g00281 7 3345523 3352591 PCT