Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00183 ATGCCCAACACAGTGCCTACTACACCAACCGGTTCCTCCTCTACTAGTCTATTTGAGCTTCTCACCGAAATGAAGAAGCAGTCCTATCCAGAATCACTCACCTTCCAAGCAAAATCTCCCTCCCAATTCTCCTCCGAATGCTGGTTCGACGATGCATGCATCTTGGACATGGATTACTTCGTCAAGACCCTTTCTGGCATCAAGGCTAAAGGCGTTCGTGCAGACCTTATTGGCTCCATCATCACACACTACGCCTCCAAATGGCTCCCTGACCTCTCTGCAGGTGACATGGCTGAAAAGGGTCTCACCCAATTTGAGGAATCACCTGAAAGCGTGACGGCTTCATGGATGAAGAAGAGGTTCTTCGTGGAAACCTTGGTGGGTGTTCTGCCTCCTGAGAAGGATGCAATTCCATGCAACTTCCTGCTTCGGCTTCTGAGAACGGCCAACATGGTTGGGGTTGAGGGTACCTATAGGCAAGAGCTTGAGAAGCGTATTTCGTGGCAGTTGGACCAGGCTTCGTTGAAGGAGTTGGTGATACCATCTTTTAGCCACACTTGTGGGACTCTCTTGGATGTTGAGTTGGTCATTAGGCTAGTTAAGAGGTTTGTGAGTTTGGACAGTGAGGGAGCTAAGAGTGTTGCTTCTTTGGTTAAGGTGGCTAAGTTGGTCGATTCCTACCTCGCAGAGGCTGCTATGGATGCCAATTTGAGCTTGAACGACTTCGTTACCCTTGCTGCAGCTCTTCCTAGCCATGCAAGAGCAACTGATGATGGCTTGTACAGAGCCATTGATACTTATCTTAAAGCGCATCCAGGAGTGTCAAAGCAAGAAAGGAAGGGTCTGTGCAGGCTAATTGACAGCCGAAAGCTAACACCAGAGGCCTCACTTCACGCAGCACAAAACGAACGGTTCCCAGTGAGAGCAGTGATTCAGGTGCTACTCTCGGAGCAGAGCAAGCTGAACCGCCACGTGGATTGGAGCGGCTCCTTGGTGAGTGGGACAAGAAGCCCTGGAGGGTTGGACTTACCAACACGGTGTCTGTCGAAGCGCGAAGTGAATGCTCAACAACACGAGATAAGGAGGCTGAAGGAAGACGTGTACAGGCTGCAAAGCCAGTGCAATGCTATGCATGCACAGATGGAGAGAATGGTGGAGAAGAAGAAAGGCTTCTTCAAGTGGAAGAAGTTTGCATTTGGCAAAGTTGAGCATGACAAAATGGAACAGCAAGAGCTTGACGGAAATGGAATGTACACACCTGCGGACCTCAAAACTAGATTGGTCAATTCCAAGGGTAGTAGTAAGAATGCTCACAAGTGGAGGAAATCCATGTCCTGA 1338 0.494 MPNTVPTTPTGSSSTSLFELLTEMKKQSYPESLTFQAKSPSQFSSECWFDDACILDMDYFVKTLSGIKAKGVRADLIGSIITHYASKWLPDLSAGDMAEKGLTQFEESPESVTASWMKKRFFVETLVGVLPPEKDAIPCNFLLRLLRTANMVGVEGTYRQELEKRISWQLDQASLKELVIPSFSHTCGTLLDVELVIRLVKRFVSLDSEGAKSVASLVKVAKLVDSYLAEAAMDANLSLNDFVTLAAALPSHARATDDGLYRAIDTYLKAHPGVSKQERKGLCRLIDSRKLTPEASLHAAQNERFPVRAVIQVLLSEQSKLNRHVDWSGSLVSGTRSPGGLDLPTRCLSKREVNAQQHEIRRLKEDVYRLQSQCNAMHAQMERMVEKKKGFFKWKKFAFGKVEHDKMEQQELDGNGMYTPADLKTRLVNSKGSSKNAHKWRKSMS 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00183 445 Pfam NPH3 family 47 296 IPR027356 -
Pumo7g00183 445 Coils Coil 353 373 - -
Pumo7g00183 445 PANTHER OS12G0117600 PROTEIN 31 409 IPR043454 -
Pumo7g00183 445 ProSiteProfiles NPH3 domain profile. 46 320 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00183 Pumo-Chr7 2027666 2030625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00183 45 389 EF-hand Containing Proteins AT3G44820 32.891 4.81e-54 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00183 - - gmx:100777676 821.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00183 7 2027666 2030625 Pumo7g00183 7 2027666 2030625 ECH
Pumo4g04279 4 83790691 83793270 Pumo7g00183 7 2027666 2030625 PCT