Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04279 ATGAAGAAGCAGTGTTGTGAAGAGTCAGAGGCAAATGTTAGATCCTGGGAATGTTGGTTCGATGATGCGTGCATTGTTGACATGGATTACTTTGTGAAGACCCTTTCAAGCATCAAACAGAAAGGTGTTCGTGCAGACTTGATTGGTTCCATCATCACTCATTATGCCTCCATATGGCTCCCTGACCTCTCTTCCTCTGCTGAAAATGGTGTCACCACTCACTTCCAATCCCCCGAAAGCGTCACGAATTCATGGATGAAGAAGAGGTTCTTTGTGGAGACCTTGGTGAGTGTTCTGCCTCCTGAGAAGGATTCTGTCCCATGCAACTTCCTCCTTCGCCTTCTCAGAACCGCCAACATGGTTCGGGTTGATGCCACTTATAGAGCTGAGCTTGAGAACCGCATTTCGTGGAAGCTAGACCAAGCTTCTCTCAAAGAGCTTATGATACCTTCCTTCAGCCACACGTGTGGGACTCTCTTGGATGTTGAGCTTGTCCTCAGGTTGGTTAAGAGGTTTATGAGTTTGGACCGTGATGGTGCTGCTTTGGTTAAGGTGGCCAAGTTGGTTGATTGCTACCTCGCTGAGGCTGCTGTGGATGCCAATTTGACCTTGTCTGAGTTCATTGCACTTGCTGGAGCTCTTCCAAGCCATGCAAGAGCCACGGATGATGGCTTGTACCGAGCCATTGACACTTATCTGAAAGCACATCCAGGTGTGTCGAAGCAAGAAAGGAAGGGCCTGTGTAGGCTACTTGATAGCCGGAAACTCACACCAGAGGCCTCACTTCATGCAGCTCAGAATGAACGGTTGCCTGTGAGAGCTGTGATTCAGGTGCTCTTCTCTGAACAAACCAAACTCAACCGCCACATAGATTGGAGTGGCTCCTTCAGTAGCTTCAGGAGCCCGAATGGAGGCCTCGACCCACCAGGACGGTGCCTTTCTAAGCGTGAAATGAATGCTCAGCAAATGGAGATAAGGAAGCTGAAGGAAGATGTTTACAGGCTGCAAAGCCAGTTCAATGCCATGCAAATGCAGATGGAGAGGATGGCAGCGAAGAAAAAGGGCTTATTCAAATGGAGGAAGTTTGGAATGCCTATGTTTAGTAGAAGTGTGGGAGGGGTGGATAAAATCGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGCCGAAGGGGAAGTTGGGTTTGGAAGGCAAACGCCTATGGACTTGAAAACCAGTCTGGTCAAAAGGACTCCCCACAAGTGGAGGAAATCCATGTCCTGA 1260 0.4873 MKKQCCEESEANVRSWECWFDDACIVDMDYFVKTLSSIKQKGVRADLIGSIITHYASIWLPDLSSSAENGVTTHFQSPESVTNSWMKKRFFVETLVSVLPPEKDSVPCNFLLRLLRTANMVRVDATYRAELENRISWKLDQASLKELMIPSFSHTCGTLLDVELVLRLVKRFMSLDRDGAALVKVAKLVDCYLAEAAVDANLTLSEFIALAGALPSHARATDDGLYRAIDTYLKAHPGVSKQERKGLCRLLDSRKLTPEASLHAAQNERLPVRAVIQVLFSEQTKLNRHIDWSGSFSSFRSPNGGLDPPGRCLSKREMNAQQMEIRKLKEDVYRLQSQFNAMQMQMERMAAKKKGLFKWRKFGMPMFSRSVGGVDKIEEEEEEEEEEAEGEVGFGRQTPMDLKTSLVKRTPHKWRKSMS 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04279 419 Pfam NPH3 family 18 261 IPR027356 -
Pumo4g04279 419 MobiDBLite consensus disorder prediction 374 399 - -
Pumo4g04279 419 ProSiteProfiles NPH3 domain profile. 17 285 IPR027356 -
Pumo4g04279 419 Coils Coil 318 345 - -
Pumo4g04279 419 PANTHER OS12G0117600 PROTEIN 16 374 IPR043454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04279 Pumo-Chr4 83790691 83793270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04279 19 348 EF-hand Containing Proteins AT3G44820 30.914 4.72e-49 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04279 - - gmx:100777820 776.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04279 4 83790691 83793270 Pumo4g04279 4 83790691 83793270 ECH
Pumo4g04279 4 83790691 83793270 Pumo7g00183 7 2027666 2030625 PCT