Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02739 ATGAACCTTGTTTTCTCCAATCGCCACTTTCCCACTCCACCAAGTGAATCTGAATTGGGTAGTGGTGGTGGTGGAGAAAGAGAAAAGGGTTACCAATCGGTGAACCTTTGCCCAAGTTGCAAAACTGCTTATTACTTCCGTCCTTATGACACTGCACCTTTGCAAGGTACCTTTGTGGAGATTGGTAGGGTCACTAGTACTAACAATAATGGTGTTAATAATGTAAGTGGTAAGGGACATTCTCCTAGGAGGATCACACATGGGAAGGGTGGTGGCAAAGAGGGTGGTAGTAGTACTAGTAGGGGTAATCATGGGGGAGAGGAAGTTGGGGGTAAGAGTAATAATACTAATGCAAGTAAATGGCTTGAAGTGTCATTGTGGGAGACTTTGATGTCTTACAATGGTGGTGCCGGTGGTAGTAATGGTAATAATGGTGAGCCACCTGAGTCGTGGCCGCCATCGTCACCAGGTGGTAGTAATGGGAATGGGAATGGATTGGCTGTGCATACTCCTCCAGGCCCACCTTTTGCACCTGGGATTAATGTTATCCGGGCTGCGGGGCCTCGCAATGGAGGTTCGGGTGGTGGTGGTGGGGGCGATGGTGAGAAGACCGCCTGGGGAGGGTCTAATTTGGGGAAGGATTTGCCCTCGCCAAAGGAGATATGTAAGGGTCTTGACAAGTTTGTTATTGGCCAACAGAGAGCCAAGAAGGTGCTCTCTGTAGCTGTTTATAACCACTATAAAAGAATATACCATGCCACTTTACAGAAAGGGTCAGCTGCAGATTCAGGAGCTTCAGAAGTATTAGATGATGACGATAATGTGGAGCTAGAAAAGAGTAATGTTCTCTTGATGGGTCCAACAGGGTCAGGGAAGACATTACTTGCTAAAACACTGGCTCGATTTGTGAATGTGCCGTTTGTCATTGCTGATGCAACAACCTTAACACAGGCAAGTATGAATTTGTTGATGAGGCTGGTTATGTTGGTGAAGATGTCGAATCAATACTGTATAAACTACTTGCGGCAGCAGATTTCAATGTTGCAGCAGGCTCAACAAGGAATAATTTACATTGATGAAGTTGACAAAATAACTAAGAAGGCTGAGAGCTTAAATATCAGCCGGGATGTTTCTGGTGAGGGAGTTCAACAGGCATTATTGAAAATGCTGGAAGGAACTATAGTAAATGTTCCCGAGAAAGGAGCTAGGAAGCATCCACGTGGGGATAACATTCAGATGGACACAAAAAATATTCTTTTTATATGTGGTGGAGCATTTATTGATCTTGAAAAAACTATTTCGGAGAGACGACAAGATTCTTCCATTGGCTTTGGAGCACCAGTTCGTGCCAATATGAGAACTGGTGGAATTACAGATTCTGCAGTAACATCATCTTTACTTGAGTCAGTGGAAAGTGCTGATCTTATTGCTTATGGTCTCATACCAGAGTTTATTGGGCGATTCCCCATCTTAGTCAGCTTGTCAGCTTTAACTGAAGACCAACTTATGATGGTCCTCACAGAACCAAAAAATGCTCTAGGCAAGCAGTACAAGAAATTATTTAGCATGAATAATGTTAAGTTACACTTCACAGAGAAAGCTCTAAGACTGATAGCAAAGAAAGCAATGGCCAAAAATACTGGTGCCAGAGGTTTAAGAGCCCTACTGGAAAGCATTTTAACCGAAGCCATGTTTGAGATTCCTGATATTAAGACAGGAAGTGACCGAGTTGATGCAGTTGTTGTTGATGAAGAGTCAGTAGGATCACTAACTGCCCCCGGATGCGGAGGGAAAATTCTTCGCGGAGATGGTGCTTTGGAGCAGTACCTAGCTAAGATGAAGGATTTGGCGGTTAATGTTGACGTAGGTGAATCATATTTACAAGAGGGGGATTTGGAGCTTTCATCAAGAGCCATGAGCTTGTGA 1926 0.4403 MNLVFSNRHFPTPPSESELGSGGGGEREKGYQSVNLCPSCKTAYYFRPYDTAPLQGTFVEIGRVTSTNNNGVNNVSGKGHSPRRITHGKGGGKEGGSSTSRGNHGGEEVGGKSNNTNASKWLEVSLWETLMSYNGGAGGSNGNNGEPPESWPPSSPGGSNGNGNGLAVHTPPGPPFAPGINVIRAAGPRNGGSGGGGGGDGEKTAWGGSNLGKDLPSPKEICKGLDKFVIGQQRAKKVLSVAVYNHYKRIYHATLQKGSAADSGASEVLDDDDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQASMNLLMRLVMLVKMSNQYCINYLRQQISMLQQAQQGIIYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQMDTKNILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGGITDSAVTSSLLESVESADLIAYGLIPEFIGRFPILVSLSALTEDQLMMVLTEPKNALGKQYKKLFSMNNVKLHFTEKALRLIAKKAMAKNTGARGLRALLESILTEAMFEIPDIKTGSDRVDAVVVDEESVGSLTAPGCGGKILRGDGALEQYLAKMKDLAVNVDVGESYLQEGDLELSSRAMSL 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02739 641 CDD RecA-like_ClpX 216 494 - -
Pumo6g02739 641 SMART AAA_5 278 448 IPR003593 GO:0016887
Pumo6g02739 641 MobiDBLite consensus disorder prediction 1 32 - -
Pumo6g02739 641 SMART ClpB_D2_small_2 497 587 IPR019489 -
Pumo6g02739 641 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 209 495 - -
Pumo6g02739 641 Pfam AAA domain (Cdc48 subfamily) 278 490 IPR003959 GO:0005524|GO:0016887
Pumo6g02739 641 Gene3D - 209 495 IPR027417 -
Pumo6g02739 641 MobiDBLite consensus disorder prediction 66 80 - -
Pumo6g02739 641 MobiDBLite consensus disorder prediction 66 117 - -
Pumo6g02739 641 NCBIfam ATP-dependent protease ATP-binding subunit ClpX 212 588 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Pumo6g02739 641 Gene3D - 496 596 - -
Pumo6g02739 641 Pfam C-terminal, D2-small domain, of ClpB protein 497 566 IPR019489 -
Pumo6g02739 641 MobiDBLite consensus disorder prediction 135 213 - -
Pumo6g02739 641 MobiDBLite consensus disorder prediction 96 117 - -
Pumo6g02739 641 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 496 599 - -
Pumo6g02739 641 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 27 615 - -
Pumo6g02739 641 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 214 582 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02739 Pumo-Chr6 65661496 65669384 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02739 K03544 - gmx:100805340 1009.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02739 6 65661496 65669384 Pumo6g02739 6 65661496 65669384 ECH
Pumo6g02739 6 65661496 65669384 Pumo3g01695 3 26051656 26057189 PCT