Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01695 ATGTCTCGAATCTTCTCCTTATGGAACAAGAAGAAGCTGCACCTCAACTTAATCCCCACTCTTTTTTTCGTCTTCCCACGCATGCTGCCAATACTGGGCTTCTGCCGGCCCAGTTTGAGACTCTACAGTAGTAGCGGTGGCAATGGGGAGCCACCAGAGGATTGGCCTCACGACGCTACGCAATCGCAAACTCCTATTAGTGTTAATTTCATTCGGGCCTCTGGGCCCAGGGATGACAACAGCACTGGGTGGGTCGGAGGGTCCAATTTGGGTAGGGATTTTCCGACCCCGAAGGAAATCTGCAAGGGACTCGACAAGTTTGTTATTGGCCAGCACATGGCCAAGAAGGTGCTCTCTGTAGCTGTTTATAACCACTATAAAAGAGTATACCACGGGTCAGAGGCAGATGCTGGAATCTCAGAAGGATTGGATGATGATCATGATGATGATAATGTGGAGCTAGAAAAGAGTAATGTTCTCTTGATGGGTCCAACAGGTTCAGGGAAGACGTTACTTGCGAAAACACTGGCTCGTTTTGTGAATGTTCCGTTTGTCATTGCTGATGCAACTACCCTAACAGCAGGCAAGTATGCTGGTTATGTTGGAGAAGATGTTGAATCAATATTGTATAAACTACTTGCGGCAGCAGAGTTCAATGTCCAAGCTGCTCAACAAGGGATTGTTTACATTGATGAAGTGGACAAGATAACTAAGAAGGCTGAGAGCTTGAATATTAGCCGGGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTAAAAATGCTGGAAGGAACTATAGTAAATGTTCCTGAGAAAGGAGCAAGGAAGCATCCACGGGGTGATAACATACAGATTGACACGAAGAACATTCTTTTTATATGTGGTGGAGCATTTATTGACCTTGAGAAAACCATTTCAGAGAGACGACAAGATTCTTCAATTGGTTTTGGAGCATCAGTCCGTGCCAATATGAGAACTGGTGGAGTGGAAAGTGCTGATCTTATTGCATATGGTCTCATACCAGAGTTTATAGGACGATTTCCCATCTTAATTAGCTTGTCAGCTCTAACTGAAGACCAACTTATGCAGGTCCTCACAGAACCAAAAAATGCTCTTGCCAAGCAGTACAAGAAATTATTTAACATGAATAATATTCCAGATGTTAAAGCAGGAAATGAACTGATTGATGCAGTTGTTGTTGATGAGGAGTCAGTAGGATCAGTAAATGCCCCTGGTTGTGGAGGAAAAATTCTTTGTGGAGATGGCGCTTTGGAACTGTACCTAGCTAAGATGGAGGGTTCAGTGGTTAACGGTGACGTAGCTGAACCAGACTTACACGAGGGGGAATCAGAGATTTCATCAAGAGCCATGAGCTTGTAA 1380 0.4435 MSRIFSLWNKKKLHLNLIPTLFFVFPRMLPILGFCRPSLRLYSSSGGNGEPPEDWPHDATQSQTPISVNFIRASGPRDDNSTGWVGGSNLGRDFPTPKEICKGLDKFVIGQHMAKKVLSVAVYNHYKRVYHGSEADAGISEGLDDDHDDDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTAGKYAGYVGEDVESILYKLLAAAEFNVQAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKNILFICGGAFIDLEKTISERRQDSSIGFGASVRANMRTGGVESADLIAYGLIPEFIGRFPILISLSALTEDQLMQVLTEPKNALAKQYKKLFNMNNIPDVKAGNELIDAVVVDEESVGSVNAPGCGGKILCGDGALELYLAKMEGSVVNGDVAEPDLHEGESEISSRAMSL 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01695 459 Pfam AAA domain (Cdc48 subfamily) 155 349 IPR003959 GO:0005524|GO:0016887
Pumo3g01695 459 Gene3D - 355 407 - -
Pumo3g01695 459 NCBIfam ATP-dependent protease ATP-binding subunit ClpX 92 398 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Pumo3g01695 459 SMART AAA_5 155 316 IPR003593 GO:0016887
Pumo3g01695 459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 384 IPR027417 -
Pumo3g01695 459 CDD RecA-like_ClpX 95 353 - -
Pumo3g01695 459 Gene3D - 89 354 IPR027417 -
Pumo3g01695 459 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 76 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01695 Pumo-Chr3 26051656 26057189 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01695 K03544 - gmx:100818418 738.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02739 6 65661496 65669384 Pumo3g01695 3 26051656 26057189 PCT