Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02558 ATGTGTTCTTCTGGGTTTTCAGCATCTTCCACTGCAGAGGAAGTTACTCAAGGGATCGATGGGAGTGGCCTCACTGCAATTGTCACAGGAACAACCCATGGTATTGGTACTGAGACTGCAAGAGTTCTTGCTTTGCGTGGTGTCCATGTGATTATGGCCGCGAGAGATGTGATTGCTGCAAAAATTGTCAAAGAAGCAATACTTAAAGAGATTCCCACAGCCAAAGTTGATGCCATGGAGTTAGATCTTAGCTCAATGGCATCCATTAGGAAATTTGCATCAGAGTTCATTTCATCTGGTCTTCCATTGAACATCTTGATAAACAATGCAGGAATAAGTGCATTCCCTTTCATGCTGTCCAAAGACAACATCGAACTACAATTTGCCACAAATCACTTGGGTCATTTTCTTTTAACAAATCTTTTGTTGGATACTATGAAGAAAACTGTAAGTGAAAGCCAGAAAGAAGGAAGAATTATTAATGTCTCCTCTGAAGGTCACCAATATACATATCCTGAAGGAATCCTTTTTGATAAAATTAATGATGAATCAAGTTACTTGAAGTGGTATGCATATGGACAATCAAAGCTTGCTAACATTTTACATGCCAAAGAACTTGCAAGACTTTTTAAAGAAGATGGAATAGATATTACTGCAAATTCTCTTCATCCAGGAGCTATTATCACCAATATTTATAAACCAGAGCTTAGTGGCACTGTGCCAACTGATCTACTTAATAAGCTTGGGAATTATGTGATTAAAAGCATTCCGCAGGGAGCAGCAACAACATGTTATGTAGCGTTGAACCCACAAGTGAAGGGAACTAGTGGCAAGTATTTTTCAGATAATAATCTGGCTAAACCAAGCTCACTGGCAACAGACACTGACTTGGCTAAAAAACTTTGGGATTTCAGCATGAAAATAATTGATTACAATACCCACGAGCAATTGTGA 954 0.3868 MCSSGFSASSTAEEVTQGIDGSGLTAIVTGTTHGIGTETARVLALRGVHVIMAARDVIAAKIVKEAILKEIPTAKVDAMELDLSSMASIRKFASEFISSGLPLNILINNAGISAFPFMLSKDNIELQFATNHLGHFLLTNLLLDTMKKTVSESQKEGRIINVSSEGHQYTYPEGILFDKINDESSYLKWYAYGQSKLANILHAKELARLFKEDGIDITANSLHPGAIITNIYKPELSGTVPTDLLNKLGNYVIKSIPQGAATTCYVALNPQVKGTSGKYFSDNNLAKPSSLATDTDLAKKLWDFSMKIIDYNTHEQL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02558 317 PANTHER RETINOL DEHYDROGENASE 4 309 - -
Pumo6g02558 317 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 23 286 IPR036291 -
Pumo6g02558 317 CDD retinol-DH_like_SDR_c_like 23 302 - -
Pumo6g02558 317 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 101 112 IPR002347 -
Pumo6g02558 317 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 165 IPR002347 -
Pumo6g02558 317 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 192 211 IPR002347 -
Pumo6g02558 317 Gene3D - 16 313 - -
Pumo6g02558 317 Pfam short chain dehydrogenase 25 174 IPR002347 -
Pumo6g02558 317 PRINTS Glucose/ribitol dehydrogenase family signature 101 112 IPR002347 -
Pumo6g02558 317 PRINTS Glucose/ribitol dehydrogenase family signature 25 42 IPR002347 -
Pumo6g02558 317 PRINTS Glucose/ribitol dehydrogenase family signature 151 167 IPR002347 -
Pumo6g02558 317 PRINTS Glucose/ribitol dehydrogenase family signature 215 232 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02558 Pumo-Chr6 59955606 59962312 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02558 27 177 Acyl Lipid Metabolism Gene Families AT3G55310 33.121 2.38e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02558 - - mtr:25496527 464.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02558 6 59955606 59962312 Pumo3g00972 3 14903795 14924002 PCT