Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00972 ATGTGGCCATTCAGCAGGAAAGGGGCTTCTGGGTTTTCATCATCATCCACTGCAGAACAAGTCACTGAAGGAATTGATGGAACTGGTCTCACTGCCATTGTCACAGGAGCATCCAGTGGTATTGGCACCGAGACTACGCGTGTACTTGCTTTGCGTGGTGTCCATGTGATTATGGGTGTGAGAAATATGCTTGCTGCTAAAGATGTCAAAGAAACAATACTTAAGGAGATTCCCTCCGCTAAAGTTGATGCCATGGAGTTAGATCTCAGTTCGATGGAGTCTGTCAAGAAATTTGCATCAGAGTTTAAGTCCTCTGGTCTTCCATTGAACATCTTGATAAACAATGCAGGAATTATGGCATGCCCTTTCAAGCTCTCCAAAGACAAAATTGAACTACAGTTTGCCACAAATCACTTAGGTCATTTTCTCTTGACCACTCTTTTGCTGGACACTATGAAGAAAACTTCACGTGAAACGAAGAAAGAAGGAAGAATTGTTAATGTCTCCTCTGAGGCTCACCGATTTACATATTCTGAAGGAATCTGTTTTGAAAAAATTAATGATGAATCAAGTTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGATTAATTGCCACCAATCTTTCCCGTCATATCAGTATAGCAAACGGTAACTACCACATTGTACTATTCATGTTCTGTCTAGGAATTGGAGCAGCAACAACATGCTATGTAGCATTGCACCCACAAGTGAAGGGAATTGGTGGCAAGTATTTTTCAGCCAGTAATGTGGCCAAAACAACCTCAGAGGGGACTGATGCTGATTTGGCCAAGAAACTATGGGATTTCAGCATGGATTTGACCAAGTAA 936 0.4188 MWPFSRKGASGFSSSSTAEQVTEGIDGTGLTAIVTGASSGIGTETTRVLALRGVHVIMGVRNMLAAKDVKETILKEIPSAKVDAMELDLSSMESVKKFASEFKSSGLPLNILINNAGIMACPFKLSKDKIELQFATNHLGHFLLTTLLLDTMKKTSRETKKEGRIVNVSSEAHRFTYSEGICFEKINDESSYNNWRAYGQSKLANILHANELTRRLKEDGVDISANSLHPGLIATNLSRHISIANGNYHIVLFMFCLGIGAATTCYVALHPQVKGIGGKYFSASNVAKTTSEGTDADLAKKLWDFSMDLTK 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00972 311 Gene3D - 22 311 - -
Pumo3g00972 311 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 28 272 IPR036291 -
Pumo3g00972 311 CDD retinol-DH_like_SDR_c_like 29 303 - -
Pumo3g00972 311 Pfam short chain dehydrogenase 31 178 IPR002347 -
Pumo3g00972 311 PANTHER RETINOL DEHYDROGENASE 10 311 - -
Pumo3g00972 311 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Pumo3g00972 311 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Pumo3g00972 311 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Pumo3g00972 311 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00972 Pumo-Chr3 14903795 14924002 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00972 31 183 Acyl Lipid Metabolism Gene Families AT1G62610 31.098 2.15e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00972 - - gmx:100783465 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00972 3 14903795 14924002 Pumo3g00972 3 14903795 14924002 ECH
Pumo6g02558 6 59955606 59962312 Pumo3g00972 3 14903795 14924002 PCT