Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01142 ATGGATACCAAGGGGAGACTGGTTGCAGGGTCACATAACAGGAATGAGTTTGTCCTCATCAATGCTGATGAAACTGCAAGAGTGAATGCTGTTACAGAATTGAGTGGGCAAATTTGTCAGATCTGTGGGGATGAGATAGAGGTTACTGTGGATGGTGAAACATTTGTTGCTTGCAATGAATGTGCATTCCCTGTGTGCAGACCTTGCTATGAGTATGAAAGAAGAGAGGGGAACCAAGCTTGTCCTCAGTGCAAAACCAGATACAAGCGCCTAAAGGGTAGTCCTAGAGTTGAGGGTGATGAGGAAGAGGAGGACATTGATGATTTGGAAAATGAGTTTGACATTGGAAGCAATATCAGGCGTGGACACGTTGCTGAGGCCATGCTCTCTGCTCGCCTCAACACTGGCCATGGTTCACAAATGAATGCTCCAGGGATCACGACACCATCAGAGTTTGATGCAGCTTCTATGGCTGCTGATATTCCTCTCCTGACATATGATCACGAGGATGTTGGGATTTCTGCTGATAAACATGCTCTAATTATTCCCCCATTCATGCCTCGTGGAAAACGAGTTCATCCTGTGCCTTTTCCCGATTCATCTGTGCCAGTTCAACCCAGACCTATGGATCCTAAAAAAGATTTAGCAGTTTATGGATATGGAAGTGTCGCATGGAAGGAACGAATGGAGGAATGGAAGAAAAAGCAGAATGAAAAAATTGAGGTGGTTAAGCATGAAGGGGGTAACGATGGTGGGAAAAATGGTGATGAGTTTGATGACCCTGATTTGCCAAAAATGGATGAAGGCAGGCAGCCACTGTGGAGGAAGTTGCCAATTAGTCCAAGCAAGATTAATCCATATCGAATTATAATAGTACTTCGGATTGCTGTTCTTGGCCTCTTTTTTCATTATAGAATTCTCCACCCGGTCAATGATGCATATGCATTGTGGTTGACATCAGTAATATGTGAAATCTGGTTTGCCGTGTCATGGATTTTGGATCAGTTTCCGAAATGGAGCCCAATTGAGCGAGAAACATACCTTGATCGTTTGTCATTGAGGTACGAGAAAGAAGGAAAGCCATCTGAATTAGCTGATATAGACGTTTTTGTTAGTACAGTAGATCCTATGAAAGAACCTCCACTTATAACTGCAAATACAGTACTATCCATCCTTGCTGTAGATTATCCGGTGGAGAAAGTTGCATGTTATGTCTCAGATGATGGTGCAGCTATGCTTACATTTGAGGCCCTTTCAGAGACTTCTGAGTTTGCAAGAAAGTGGGTTCCATTCTGTAAGAAGTTCAGCATTGAACCCCGGGCTCCTGAGTGGTATTTTGCTCAGAAGGTTGACTATCTGAAAGACAAAGTGGATGCAACGTTCATCAGGGAGCGTCGAGCTATTAAGAGGGATTATGAAGAGTTCAAAGTGCGTATCAACGCATTGGTTGCAATGGCACAGAAGGTTCCTGAGGATGGCTGGACAATGCAGGATGGGACTCCGTGGCCAGGAAACAGTGTCAGAGATCATCCTGGAATGATTCAGGTTTTCCTTGGTCAAAATGGCGTTCGTGATATTGAAGGGAATGAGTTACCTCGTCTTGTCTATGTGTCACGTGAGAAAAGACCAGGATTTGAACACCACAAAAAAGCTGGTGCTATGAATGCTTTGGTGCGAGTCTCAGCAGTCATATCAAATGCTCCTTACCTACTCAATGTCGATTGTGATCACTACATAAACAACAGCAAAGCACTTCGAGAAGCAATGTGCTTCATGATGGATCCTACATCAGGGAAAAAAATATGCTATGTACAATTTCCTCAAAGATTTGATGGGATTGATCGTCATGATAGATACTCAAATAGAAATATTGTATTCTTTGATATAAACATGAAAGGTTTAGATGGCATCCAAGGACCAATATATGTTGGAACTGGGTGTGTCTTTAGGAGGCAAGCACTCTATGGATATGATGCGCCTGCTACGAAGAAACCACCAAGGAAGACCTGTAACTGTTGGCCCAAATGGTGCTGCCTGTGTTGTGGATCTAGGAACAAGAATAGGAAAGTGAAGTCAGGTCCAAGAAAGAAGATAAAAAACAAGGATGCTACAAAGCAAATACATGCACTAGAAAATATTGAAGAGGGAATTGAAGGAATCGACAGTGAGAAGTCATGGTTAATGTCACAACTAAAATTTGAGAAAAAATTTGGGCAATCAGCTGTTTTCATAGCTTCAACACTTATGGAAGATGGGGGTATTCTAAAAGGAGCAACTTCTGCATCACTTTTGAAAGAAGCCATTCATGTCATCAGTTGTGGTTATGAAGATAAGACAGAGTGGGGGAAAGAGGTTGGATGGATATATGGTTCTGTTACAGAAGATATATTAACAGGTTTCAAGATGCACTGTCATGGTTGGCGATCTGTGTACTGCATGCCTAAAAGGCCTGCTTTTAAGGGTTCAGCTCCCATAAATCTTTCGGATCGTCTGCATCAAGTTCTCCGTTGGGCACTTGGATCTGTTGAGATCCTGTTGAGTAAGCATTGTCCTATATGGTATGGATATGGTTGTGGCTTGAAATGGCTGGAGCGCTTTTCTTACATAAATTCAGTCGTTTATCCTTTGACATCAATTCCCTTAATTGCCTACTGCACCTTGCCGGCTGTCTGTCTTCTCACTGGAAAGTTCATAGTCCCTGAGATTAGCAACTATGCCAGTATCATTTTCATGGCACTCTTCATCTCCATAGCTGCAACAGGCATCCTGGAAATGCAATGGGGAGGTGTTGGCATACAAGACTGGTGGAGGAATGAGCAGTTCTGGGTCATTGGCGGTGCCTCTTCACACCTCTTTGCTCTCTTTCAGGGTTTGCTCAAGGTTCTGGCAGGAGTTGACACAAACTTCACAGTCACATCCAAAGCTGCAGATGATGGAGACTTTGCTGAACTCTACCTCTTCAAGTGGACATCATTGCTGATCCCTCCTTTGACCTTGCTCATCATAAACATAATTGGAGTTATTGTAGGTGTTTCAGATGCAATAAACAATGGATATGATTCATGGGGTCCCCTATTTGGTAAGCTATTTTTTGCTCTTTGGGTCATTGTCCATCTTTACCCCTTCCTCAAGGGAGTTATGGGAAAACAGGAAGGTGTTCCCACCATCATTTTGGTCTGGGCTATTCTTCTGGCTTCAATCTTCTCACTTCTTTGGGTGAGGATCAACCCATTTTTGTCAAAAGATGACATTGTGTTGGAGCTTTGTGGGTTGAATTGTGACTAG 3285 0.4304 MDTKGRLVAGSHNRNEFVLINADETARVNAVTELSGQICQICGDEIEVTVDGETFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEEDIDDLENEFDIGSNIRRGHVAEAMLSARLNTGHGSQMNAPGITTPSEFDAASMAADIPLLTYDHEDVGISADKHALIIPPFMPRGKRVHPVPFPDSSVPVQPRPMDPKKDLAVYGYGSVAWKERMEEWKKKQNEKIEVVKHEGGNDGGKNGDEFDDPDLPKMDEGRQPLWRKLPISPSKINPYRIIIVLRIAVLGLFFHYRILHPVNDAYALWLTSVICEIWFAVSWILDQFPKWSPIERETYLDRLSLRYEKEGKPSELADIDVFVSTVDPMKEPPLITANTVLSILAVDYPVEKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFAQKVDYLKDKVDATFIRERRAIKRDYEEFKVRINALVAMAQKVPEDGWTMQDGTPWPGNSVRDHPGMIQVFLGQNGVRDIEGNELPRLVYVSREKRPGFEHHKKAGAMNALVRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNIVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPATKKPPRKTCNCWPKWCCLCCGSRNKNRKVKSGPRKKIKNKDATKQIHALENIEEGIEGIDSEKSWLMSQLKFEKKFGQSAVFIASTLMEDGGILKGATSASLLKEAIHVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSKHCPIWYGYGCGLKWLERFSYINSVVYPLTSIPLIAYCTLPAVCLLTGKFIVPEISNYASIIFMALFISIAATGILEMQWGGVGIQDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVDTNFTVTSKAADDGDFAELYLFKWTSLLIPPLTLLIINIIGVIVGVSDAINNGYDSWGPLFGKLFFALWVIVHLYPFLKGVMGKQEGVPTIILVWAILLASIFSLLWVRINPFLSKDDIVLELCGLNCD 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01142 1094 FunFam Cellulose synthase 484 658 - -
Pumo3g01142 1094 FunFam Cellulose synthase 21 112 - -
Pumo3g01142 1094 Pfam Cellulose synthase 367 1083 IPR005150 GO:0016020|GO:0016760|GO:0030244
Pumo3g01142 1094 Pfam Zinc-binding RING-finger 31 105 IPR027934 -
Pumo3g01142 1094 CDD mRING-HC-C4C4_CesA 37 87 - -
Pumo3g01142 1094 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 271 1059 - -
Pumo3g01142 1094 SUPERFAMILY RING/U-box 27 107 - -
Pumo3g01142 1094 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Pumo3g01142 1094 SUPERFAMILY Nucleotide-diphospho-sugar transferases 380 907 IPR029044 -
Pumo3g01142 1094 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Pumo3g01142 1094 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 513 663 IPR029044 -
Pumo3g01142 1094 MobiDBLite consensus disorder prediction 245 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01142 Pumo-Chr3 18554911 18561366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01142 1 1093 Glycosyltransferase AT5G64740 79.326 0.0 1783
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01142 K10999 - gmx:100806786 2008.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02365 6 46800654 46808962 Pumo3g01142 3 18554911 18561366 PCT