LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo6g02204	ATGGGAGCGAGTCGAAAACTTCAGGGCGAGATTGATCGTGTTCTCAAGAAGGTTCAAGAAGGCGTCGAAGTCTTCGATAGCATCTGGAACAAGGTTTACGACACGGAGAATGCGAACCAGAAGGAGAAGTTCGAGGCTGACCTGAAGAAGGAGATTAAGAAGCTGCAGAGGTACAGGGACCAGATTAAGACATGGATTCAGTCCAGTGAGATCAAAGACAAGAAGGTTAGTGCCTCATATGAGCAGGCTCTGGTGGATGCACGAAAGCTTATTGAGCGTGAAATGGAGAGATTCAAGATCTGTGAGAAGGAGACAAAGACAAAAGCATTCTCCAAAGAAGGCTTAGGTCAACAGCCTAAAACTGATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTGGTTGGGGAGTTAGAATCTCAGATCGATAACTTTGAAGCTGAGCTTGAAGGACTTTCTGTAAAGAAAGGAAAGGCCAGGCCACCCAGATTGACACATCTAGAAACATCAATTACTCGGCACAAGGCTCATGTAAAGAAATGTGAATTTATCTTGAGGCTACTAGATAATGATGAACTAAGTCCAGAGCAGGTTAATGATGTCAAAGATTTCCTGGATGACTATGTAGAGCGTAATCAGGAGGACTTTGAAGAATTTAGTGGCGTTGATGAGCTATATAGTTCATTACCCTTAGACAAGGAGGAGTCACTTACAGATATCGTTACAATTCCCCCTGGTCTTGCTAAGGTGGCACCTGTGCTTAGCTTGAAGCCTTCTTTGGCAGCATCAGCTTCAGCATCACAAACATCTGAGCAAGCTGATGATACAGCTTCCCAGGATAGCAATTCTGATATTGGTGCAAGAACTCCACCTCCTAAAAGTAGTATAGTTAGTCCTACTACTACAACACCACCAGGGAATTTTGCTACTCCTGTTTCTATGAATGTTCCAGTGCCTAACTTGTCGAGTCCACCAGCCATTGCATCAGTCATGCCCGGTTCAAATTCTGTTCGGAGTCCCGTGGAGCTTAGTAGTGCTGTCAATGCTTCACCTTTTGTAAATCAGTCTAGCACTATGAAGGAGGAAGAGATTAATAGTTTCCCTGGCCAAAGGCCATCTCCATTGCTTTCTGATGTTGCACTCGTAAGGAACATGAGCAGAAACAGCCTATCAAATCAAGCAACAAATAACATACCTCTTGTTTCTGGCAACATGGTTTCCAGCAATGGGCCCCTTGGTTCAGTCCCTTCAGCATCTGAAATAACCAAGAGAAACATATTGGTCGCTGATGATAGACTTGGAAGCAATGGGATGGTGCAGCCTCTTGTATCCCCTTTAAGTAATAGAATGATCATGCCTCAGGTTGCAAGGGCTAATGATGGAACTTCCTCAGTTGACTCTAGTAATGTCAACGAAACTGCAGCTGTATCTGGGAGAGTTTTCTCCCCTTCTGCTGTTCCTGGTATGCAATGGAGACCTGGAAGCCCCTTCCAGAATCAGAATGATGTGATTCGTGGAAGAACTGAAATAGCTCCTGATCAAAGAGAAAGATATTTGCAGAAGTTGCAGCAAGTGCAGCAACAAGTGCAGCAACAAGGGCAAAGTGCCCTACTTAATATGCCATCTTTTGCAGGAGGAAATCCTAAGCAGTTTTCTGCTCAGCAACAAAATCCTCTCTTACAGCAGTTCAATTCTCAAGGCTCATCTGTTGCTTCTCAATCTGGTGTGGGACTTGGAGTCCAGTCATCAGGTCTTAGTGGTATTGCTTCCACCTCATTACCGCAGCCACCCAATTCTGTTCATTCCCCATCTAGCCAACAACCATTGCTGTCTGTTGTTTTCAAAGATGCAGATGTTGGCAATTCTAAGGTTGACGAGCCACAACAACAACAGATTTTTCCTGATGATTTGGGGACTGAATCTACTGCTAGTACTGGGATTGGCAAGAATTTCGTTAATGAAGATGAATTGAAATCCACATATGCTGTAGATTCTCCTACAGGAGTACCTGCCTCTCTTCCAGAGCTTGCTCAGACTTCTAGAGATATTGATTTGTCTCCTGGCCAACCTTTACAATCAAATCAGCGTACTGGTAACCTTGGTGTCATAGGAAGAAGTTCTACTGACCATGGAGCTGTTGGTGACAACTTTAGTGCATCAATTGTGAATTCTGGCGGAGTTCGTGATCAATTATATAATTTGCAGATGCTTGAGGCAGCTCACCTCAAACTTCCACAACCTAAGGACTCAGAACGTCCTAGGACCTATACTCCTAGACACCCTACGATAACACCTCCTAGTTTTCCTCAAGTACAGGCACCTATTGTTAATAATCCTGCCTTTTGGGAGAGAGTAGGTCTCGAACCATATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAGAACACTTACCAACAATATATGGCTGCAAAAGAGCTAAAGAAGCAGTCTTGGAGATATCACCGGAAGTATAACACATGGTTTCAACGGCATGAAGAGCCAAAAGTTGCAACAGATGAATATGAGCAGGGAACATATGTGTACTTTGATTTCCATATTGCAAATGATGATCTGCAACATGGGTGGTGTCAAAGAATCAAGACTGACTTCACTTTTGAATATAACTATCTTGAAGATGAGCCTATTGTCTAG	2670	0.4356	MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTENANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPREKAKSETRDWLNNVVGELESQIDNFEAELEGLSVKKGKARPPRLTHLETSITRHKAHVKKCEFILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFEEFSGVDELYSSLPLDKEESLTDIVTIPPGLAKVAPVLSLKPSLAASASASQTSEQADDTASQDSNSDIGARTPPPKSSIVSPTTTTPPGNFATPVSMNVPVPNLSSPPAIASVMPGSNSVRSPVELSSAVNASPFVNQSSTMKEEEINSFPGQRPSPLLSDVALVRNMSRNSLSNQATNNIPLVSGNMVSSNGPLGSVPSASEITKRNILVADDRLGSNGMVQPLVSPLSNRMIMPQVARANDGTSSVDSSNVNETAAVSGRVFSPSAVPGMQWRPGSPFQNQNDVIRGRTEIAPDQRERYLQKLQQVQQQVQQQGQSALLNMPSFAGGNPKQFSAQQQNPLLQQFNSQGSSVASQSGVGLGVQSSGLSGIASTSLPQPPNSVHSPSSQQPLLSVVFKDADVGNSKVDEPQQQQIFPDDLGTESTASTGIGKNFVNEDELKSTYAVDSPTGVPASLPELAQTSRDIDLSPGQPLQSNQRTGNLGVIGRSSTDHGAVGDNFSASIVNSGGVRDQLYNLQMLEAAHLKLPQPKDSERPRTYTPRHPTITPPSFPQVQAPIVNNPAFWERVGLEPYGTDTLFFAFYYQQNTYQQYMAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEYEQGTYVYFDFHIANDDLQHGWCQRIKTDFTFEYNYLEDEPIV	889

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo6g02204	889	PANTHER	CCR4 NOT-RELATED	24	886	IPR040168	GO:0030015
	Pumo6g02204	889	MobiDBLite	consensus disorder prediction	686	708	-	-
	Pumo6g02204	889	Coils	Coil	519	539	-	-
	Pumo6g02204	889	Gene3D	-	729	884	IPR038635	-
	Pumo6g02204	889	Pfam	NOT2 / NOT3 / NOT5 family	746	883	IPR007282	GO:0006355
	Pumo6g02204	889	Coils	Coil	41	61	-	-
	Pumo6g02204	889	Coils	Coil	132	159	-	-
	Pumo6g02204	889	MobiDBLite	consensus disorder prediction	110	131	-	-
	Pumo6g02204	889	MobiDBLite	consensus disorder prediction	747	774	-	-
	Pumo6g02204	889	Pfam	Not1 N-terminal domain, CCR4-Not complex component	4	236	IPR007207	GO:0005634\|GO:0006355
	Pumo6g02204	889	MobiDBLite	consensus disorder prediction	269	315	-	-
	Pumo6g02204	889	FunFam	CCR4-NOT transcription complex subunit 3 isoform X1	729	884	-	-
	Pumo6g02204	889	MobiDBLite	consensus disorder prediction	626	652	-	-
	Pumo6g02204	889	PIRSF	NOT_su_3_5	1	889	IPR012270	GO:0006355\|GO:0030015
	Pumo6g02204	889	MobiDBLite	consensus disorder prediction	686	711	-	-
	Pumo6g02204	889	MobiDBLite	consensus disorder prediction	627	652	-	-
	Pumo6g02204	889	MobiDBLite	consensus disorder prediction	591	611	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo6g02204	Pumo-Chr6	41068128	41092705	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo6g02204	K12580		-	gmx:100780204	1571.6

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo5g02029	5	56028678	56042622	Pumo6g02204	6	41068128	41092705	PCT