LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo5g02029	ATGGGTGCGAGTCGAAAACTCCAGGGAGAGATAGATCGCGTTCTCAAGAAGGTCCAAGAAGGCGTTGAAGTCTTCGATAGCATCTGGAACAAGGTTTACGACACGGACAATGCTAACCAGAAGGAGAAATTTGAAGCAGACCTCAAGAAGGAGATTAAGAAGCTCCAGAGGTACAGAGACCAAATTAAGACTTGGATTCAGTCCAGTGAGATCAAGGACAAGAAGGTTAGTGCCTCATATGAGCAGGCTCTGGTGGATGCACGCAAGCTAATTGAGCGAGAAATGGAAAGATTTAAGATATGTGAGAAGGAAACTAAGACCAAAGCATTCTCCAAAGAAGGCTTGGGTCAACAGCCTAAGACTGATCCAAAAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTAAACAATGTGGTTGGAGAGTTAGAATCCCAGATTGATAACTTTGAAGCGGAGCTTGAAAGACTTTCCGTTAAGAAAGGAAAGAGCAGGCCACCCAGATTGACACATCTAGAGACATCAATTACTCGGCACAAGGCTCATATAAAAAAATGTGAATTCATTTTGAGGCTACTAGATAATGATGAATTAAGTCCTGAGCAGGTCAATGATGTCAAAGATTTCTTGGATGACTATGTTGAGCGTAATCAGGACGATTTTGATGAGTTTGATGATGTTGATGAACTATACAGTTCATTACCTTTAGATAAGGTGGAGACTCTAGAAGATCTTGTTACAATTCCCCCTGGTCTTTCTAAGGTGGCACCTAGTCTTAGCTTGAAGAATACTTTGACAGTATCAACATCACAATCAGCATCAGCATCTGCATCTCAAACATCTGAGCAAGCTGATGACACAGCATCCCAGGATAGCAATTCTGACATTGTTGCCAAAACTCCACCTCCTAAAAGTGGTGGAATTAGTTCTGCTACTTCAACTCCTGTTGGTAACCATGCTACTCCTGTTTCCGTGAATGTTTCTGGTCATAACTTGTCTAGTGCACCTGCTGTTGCAGCCCTACCTGGTTCAAATTCTGTGCGGAATGTCTTGGAGAGTACTAATGTAACCAATTCATCTTCTGTAAATCAGTCTACCTCTACAAAGGAAGAAGAGATTAATAGCTTCCCTAGCCGGAGACCGTCTCCATCACTTTCTGATGCAACACTTTTGAGGGGCAGAAACAGCCTGTCAAATCAAGCAACAGCCAGCATTCCTCTTGGTTCTGGAAACATGGTTTCTAGCAATGGGGCCCTTGGATCAGTCCCTTCAGCCTCTGAAATATCTAAAAGGAACATATTGGGAGCTGATGATAGACTTGGAAGTAGTGGGATGGTGCAGCCTCTTGTATCCCCGCTAAGTAATAGATTGATCTTGCCCCAGGCTGCAAAGGCTAATGATGGAACTGTTTCAGTTGACTCTAGTACTGTTAATGAAGCTGCAGCTGGGAGAGTTTTCTCCCCTTCTGTGGTTCCTGGCATGCAATGGAGACCTGGAAGTCCCTTTCAGAATCAGAATGATGCAGGCCAGCTTCGTGGAAGAACTGAAATAGCTCCTGATCAAAGGGAAAAGTTTTTGCAGAAGTATCAGCAAGTGCAACAAGGGCACAGTACCCTTCTTAATATGCCTTCTCTCGTTGGTGGAAACCATAAGCAGTTTTCTGCCCAGCAGCAAAATCCCCTTTTGCAGCAGTTTAACTCTCATGGCTCATCTGTTTCTTCTCAATCTGGTATTGGACTTGGGGTCCAGTCCACAAGTCTTGGTGGTATTTCTTCTTCACTACAGCAGCCACCCAATTCTGTCCATTCCCCCTCTAGTCAACAGCCATTGATGCCAGGTGTTTCTAAAGATGCAGATGTTGGCAATTCTAAGATTGAAGAACAACAGCAACATCAGAATTTCCCTGATGATTCAACAACTGAATCTACTGCTAGCGCTGGGATTGGCAAGAATCTCATAAATGAAGATGATTCAAAATCATCATATGCTGTAGATTCTCCTGCAGGAGTGTCTGCCTCTCTTCCAGAATCTGCTCAAACTTCCAGGGATATTGATCTGTCTCCTGGCCAACCATTACAATCCAATCAACCTACTGGCAACCTTGGTGTCATTGGAAGAAGAAATGGTGTTGAACATGGAGCCATTGGTGATAATTTTAGTGGATCGAGTGTTAGTTCTGGTGGAGTGCGTGATCAATTATATAATTTGCAAATGCTTGAGGCAGCCCACTTCAAAATTCCACTACCCAAAGACTCAGAACGTCCCAGGACTTATAATCCTAAGCATCCAGCGATTACACCTCCTAGTTATCCTCAAGTACAGGCACCTATTGTTAATAATCCTGCCTTTTGGGAGAGAGTAGGTCTTGAACCATTTGGCACTGATACTCTGTTCTTTGCATTTTATTATCAACAGAATACTTACCAACAATATTTGGCTGCAAAGGAGTTAAAGAAGCAGTCTTGGAGATACCACCGAAAGTATAACACTTGGTTTCAGCGGCATGAAGAGCCCAAAGTTGCTACCGATGAATATGAGCAGGGAACTTATGTGTATTTTGATTTCCATATTGCAAATGATGACATGCAACATGGATGGTGTCAAAGAATCAAGACTGAATTCACTTTTGAGTATAATTATCTTGAAGATGATCTTCTTGTATAG	2661	0.428	MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNVVGELESQIDNFEAELERLSVKKGKSRPPRLTHLETSITRHKAHIKKCEFILRLLDNDELSPEQVNDVKDFLDDYVERNQDDFDEFDDVDELYSSLPLDKVETLEDLVTIPPGLSKVAPSLSLKNTLTVSTSQSASASASQTSEQADDTASQDSNSDIVAKTPPPKSGGISSATSTPVGNHATPVSVNVSGHNLSSAPAVAALPGSNSVRNVLESTNVTNSSSVNQSTSTKEEEINSFPSRRPSPSLSDATLLRGRNSLSNQATASIPLGSGNMVSSNGALGSVPSASEISKRNILGADDRLGSSGMVQPLVSPLSNRLILPQAAKANDGTVSVDSSTVNEAAAGRVFSPSVVPGMQWRPGSPFQNQNDAGQLRGRTEIAPDQREKFLQKYQQVQQGHSTLLNMPSLVGGNHKQFSAQQQNPLLQQFNSHGSSVSSQSGIGLGVQSTSLGGISSSLQQPPNSVHSPSSQQPLMPGVSKDADVGNSKIEEQQQHQNFPDDSTTESTASAGIGKNLINEDDSKSSYAVDSPAGVSASLPESAQTSRDIDLSPGQPLQSNQPTGNLGVIGRRNGVEHGAIGDNFSGSSVSSGGVRDQLYNLQMLEAAHFKIPLPKDSERPRTYNPKHPAITPPSYPQVQAPIVNNPAFWERVGLEPFGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEYEQGTYVYFDFHIANDDMQHGWCQRIKTEFTFEYNYLEDDLLV	886

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo5g02029	886	Coils	Coil	41	61	-	-
	Pumo5g02029	886	Gene3D	-	726	881	IPR038635	-
	Pumo5g02029	886	Coils	Coil	132	159	-	-
	Pumo5g02029	886	MobiDBLite	consensus disorder prediction	748	771	-	-
	Pumo5g02029	886	MobiDBLite	consensus disorder prediction	110	131	-	-
	Pumo5g02029	886	MobiDBLite	consensus disorder prediction	352	388	-	-
	Pumo5g02029	886	MobiDBLite	consensus disorder prediction	564	618	-	-
	Pumo5g02029	886	MobiDBLite	consensus disorder prediction	650	705	-	-
	Pumo5g02029	886	PANTHER	CCR4 NOT-RELATED	24	882	IPR040168	GO:0030015
	Pumo5g02029	886	Pfam	NOT2 / NOT3 / NOT5 family	742	880	IPR007282	GO:0006355
	Pumo5g02029	886	PIRSF	NOT_su_3_5	1	886	IPR012270	GO:0006355\|GO:0030015
	Pumo5g02029	886	MobiDBLite	consensus disorder prediction	564	611	-	-
	Pumo5g02029	886	MobiDBLite	consensus disorder prediction	650	701	-	-
	Pumo5g02029	886	FunFam	CCR4-NOT transcription complex subunit 3 isoform X1	726	881	-	-
	Pumo5g02029	886	Pfam	Not1 N-terminal domain, CCR4-Not complex component	4	236	IPR007207	GO:0005634\|GO:0006355
	Pumo5g02029	886	MobiDBLite	consensus disorder prediction	268	327	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo5g02029	Pumo-Chr5	56028678	56042622	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo5g02029	K12580		-	gmx:100783415	1582.39

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo5g02029	5	56028678	56042622	Pumo5g02029	5	56028678	56042622	ECH
	Pumo5g02029	5	56028678	56042622	Pumo6g02204	6	41068128	41092705	PCT