Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01284 ATGCCTCCTTCACACTTCCCTCTTCGTTGGGAGAGCACAGGAGACCGATGGTGGTATGCATCTCCCATTGATTATGCTGCTGCAAATGGCCTCTATGATCTGGTCACTGAGCTTCTCCACCTTGACACCAACCTCCTCATTAAGCTCACTTCCCTTCGCAGAATTCGCCGTCTTGAAGCCGTGTGGGACGATGAGTCTAAGTTTGAGGATGTTGCCAAGTGTCGGTCCAAGGTTGCAAGGAATCTTATGCTTGAGTGTGAGACAGGAAGAGGGCACAACTCTCTCATCCTTGCAGGCTATGGTGGATGGCTTCTCTACACTGCTGCTTCGGCCGGGGATGTGGATTTTGTTCTTGAGTTGTTGGGGAGAGACCCTTTGTTGGTGTTTGGTGAGGGAGAGTATGGTGTCACTGACATGCTGTATGCTGCAGCGAGGGGCAAGAACTGTGAGGTCTTTAAGCTCCTGCTTCAGTCTGCTCTTTCAAGAAAGGAGTGCCTTGGTGGCAGTGAAGCAGAATTGGAAGAGAAGTTGGATGAAGGTGCTAAGGTTTTCAAGAGGGATGTGATGAATAGGGCCATTCATGCTGCTGCCAGAGGAGGGAATTGGGAAATACTGAAGCAGATTCTAGAAAGTGTTTCTGTTTCTCAGATTTTGTCTTATAGAGATGCCCAAGGATGTACTGTCTTGCATGCAGCAGCTGCAAGGGGCCAGGTTGAGGTGGTGAAAAATCTAATTGAATCCTATGATATCATCAACTCAGCTAATGCTCAAGGCAATACAGCATTACATGTGGCTTCTTACAGAGGTTACTTACCCGTGGTGGAGATTCTGATTGGAGCATCTCCCTCATTAGCATCGTTAACCAATCACTATGGAGATACTTTTCTTCACATGGCAGTGGTTGGTTTCAGAAGCCCTGGTTTCTGTAGACTGGACAAACACACTGAGCTCATGAAGCAACTGACAAGTGAAAACATTGTGAACATGAAGGACATCATCAATGTCAGAAACAATGATGGAAAAACAGCTCTTCATGTGGCTGTGATTCACAATATCCAATGTGATGTAGTGGAATTGCTGATGTCTGTTCCATCAATTGATTTGAACATTCGCGATGCCGATGGGATGACCCCTTTGGATCATCTTAGGCAAAGATCACGATCAGCATCTTCTGATGTTTTAATCAAGCAGTTAATTTCAGCTGGAGGGATCTCTAATTATCAGGACTATGTGACAAGAAATGTCCTTGTTAAGCATCTTAGGACTCATGGTATTGGAGGCAGTCCTGGAACATCATTCAGAATACCAGATTCTGAGATATTGTTGTACACAGGCATTGAGAATTCATGTGATGCAAATTATGACCAGGCAAGTGTAGAATCAAATTCATGGTCAAGTGAAATAAACAATTATGACTCAGCCAATTCTCCATGTAACAGCAAGTCTAGTTCTGTCAATTATGGTGCAAGGCGCTTAAAGTTTCTGCTCCAAAGTTCTTCTAGAAGAAGAGTCACAAAAGAAGCAGCCTCAGAGTTAGAAGATGATGCTTCTGTGAATTCTTTCAGTTCAAGGAACAACTTGGAAGAAGACTTTCCAATCCCATTGAGGCAAAGATACTCAAAAATGTGTTCTCTTCCAAACAACAAAAGAACACTATCTATAAGGACTTATCTTCCAAGTCCTTCAGCCAAAAAATATTTTCATGCAGGCCTAATGCAAGGGGTGATTAAGGTAAAGCCACAAGTGCCTCTTCCTGTTCATTCAACTTCTGATCTTTTTCAAGAACTATCTATCTCTTCTCATTCTTCGAATAATAAGCAAAAACGTGTTGATATAATGGGACCCTCTTGCTCCAATCGACCAATGGATGGTGGTGGTAACCTACAGTTGAACTATAAGCAGGGCTCTTTCAACAAGAAATTGATGAACCGGTATTTTTCTTTTGGAGCACATGACCAGGCTTTGGAAGATGCAAATAGCTGCACAATGTCAAATGGCAGTTCTAAGCAATTTAGTTCTTTAGTTGCATAA 2031 0.4313 MPPSHFPLRWESTGDRWWYASPIDYAAANGLYDLVTELLHLDTNLLIKLTSLRRIRRLEAVWDDESKFEDVAKCRSKVARNLMLECETGRGHNSLILAGYGGWLLYTAASAGDVDFVLELLGRDPLLVFGEGEYGVTDMLYAAARGKNCEVFKLLLQSALSRKECLGGSEAELEEKLDEGAKVFKRDVMNRAIHAAARGGNWEILKQILESVSVSQILSYRDAQGCTVLHAAAARGQVEVVKNLIESYDIINSANAQGNTALHVASYRGYLPVVEILIGASPSLASLTNHYGDTFLHMAVVGFRSPGFCRLDKHTELMKQLTSENIVNMKDIINVRNNDGKTALHVAVIHNIQCDVVELLMSVPSIDLNIRDADGMTPLDHLRQRSRSASSDVLIKQLISAGGISNYQDYVTRNVLVKHLRTHGIGGSPGTSFRIPDSEILLYTGIENSCDANYDQASVESNSWSSEINNYDSANSPCNSKSSSVNYGARRLKFLLQSSSRRRVTKEAASELEDDASVNSFSSRNNLEEDFPIPLRQRYSKMCSLPNNKRTLSIRTYLPSPSAKKYFHAGLMQGVIKVKPQVPLPVHSTSDLFQELSISSHSSNNKQKRVDIMGPSCSNRPMDGGGNLQLNYKQGSFNKKLMNRYFSFGAHDQALEDANSCTMSNGSSKQFSSLVA 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01284 676 Pfam Ankyrin repeats (3 copies) 193 282 IPR002110 GO:0005515
Pumo6g01284 676 ProSiteProfiles Ankyrin repeat region circular profile. 224 246 - -
Pumo6g01284 676 ProSiteProfiles Ankyrin repeat region circular profile. 257 278 - -
Pumo6g01284 676 Pfam Ankyrin repeat 339 372 IPR002110 GO:0005515
Pumo6g01284 676 SUPERFAMILY Ankyrin repeat 104 395 IPR036770 -
Pumo6g01284 676 Gene3D - 211 399 IPR036770 -
Pumo6g01284 676 ProSiteProfiles Ankyrin repeat profile. 224 256 IPR002110 GO:0005515
Pumo6g01284 676 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 5 406 - -
Pumo6g01284 676 ProSiteProfiles Ankyrin repeat profile. 257 289 IPR002110 GO:0005515
Pumo6g01284 676 SMART ANK_2a 339 370 IPR002110 GO:0005515
Pumo6g01284 676 SMART ANK_2a 188 216 IPR002110 GO:0005515
Pumo6g01284 676 SMART ANK_2a 18 47 IPR002110 GO:0005515
Pumo6g01284 676 SMART ANK_2a 100 129 IPR002110 GO:0005515
Pumo6g01284 676 SMART ANK_2a 224 253 IPR002110 GO:0005515
Pumo6g01284 676 SMART ANK_2a 291 331 IPR002110 GO:0005515
Pumo6g01284 676 SMART ANK_2a 134 164 IPR002110 GO:0005515
Pumo6g01284 676 SMART ANK_2a 374 407 IPR002110 GO:0005515
Pumo6g01284 676 SMART ANK_2a 257 286 IPR002110 GO:0005515
Pumo6g01284 676 Gene3D - 12 210 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01284 Pumo-Chr6 17022921 17026692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01284 193 380 Miscellaneous Gene Families AT2G31820 34.921 2.60e-19 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01284 - - gmx:100791999 1262.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00428 1 5953669 5957141 Pumo6g01284 6 17022921 17026692 PCT