Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00431 ATGGCTTCCATTGCCGGATCCAACTGCGTCGCTCTCCGAACGGCCAACTTCGGCGTCTCCGGTAACCGGAAAATCGGTCAGATCCGGCAATGGTCTCCGATTCTCACGAATCTCCGTCCCGTTCCCGGTCTTCGCCATCGATCGAATACTCCGTTTAGCTCCTCCGGTGTGAGAGCACAGGTTGCTACACTGGAGGAGGCGGGAACCGGAGCAACGCAGAAAGTGGAAGCGCCGGTTGTAGTGGTGACCGGAGCTTCCAGAGGCATTGGCAAAGCGATTGCACTGTCGTTAGGTAAAGCAGGTTGCAAGGTTCTGGTCAACTATGCAAGGTCATCCAAGGAAGCCGAGGAGGTTTCCAAGGAGATTGAGGCGTTTGGTGGGCAAGCTCTTACATTTGGTGGAGATGTTTCTAACGAGGCTGACGTGGAGTCTATGATTAAAACTGCAGTTGATGCTTGGGGAACAGTTGATGTATTAATAAACAATGCAGGAATAACTAGAGATGGTTTATTAATGAGAATGAAGAAATCTCAATGGCAGGAGGTTATTGATCTAAATCTCACTGGTGTTTTTCTTTGCACACAGGCTGCTGCTAAGATTATGATGAAGAAAAAGAAGGGAAGGATCATCAATATTGCATCAGTTGTTGGTTTGGTTGGCAATGTTGGACAAGCCAATTATAGTGCTGCAAAAGCAGGAGTAATTGGCCTGACAAAAACTGTTGCAAAGGAATATGCTAGCAGAAGCATCACTGTTAATGCAGTTGCTCCAGGGTTTATTGCATCTGACATGACTGCCAAGCTAGGACAAGACATTGAGAAAAAGATTTTGGAGACAATCCCATTAGGAAGATATGGCCAACCAGAGGAAGTTGCTGGACTGGTTGAATTCTTGGCTCTTAATCAAGCTGCCAGTTACATCACTGGACAGGTCATTTATTATTCCCCTGTAAAAATAAAAAATGACAGAATCACCTGGTTAAACTAG 987 0.461 MASIAGSNCVALRTANFGVSGNRKIGQIRQWSPILTNLRPVPGLRHRSNTPFSSSGVRAQVATLEEAGTGATQKVEAPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSSKEAEEVSKEIEAFGGQALTFGGDVSNEADVESMIKTAVDAWGTVDVLINNAGITRDGLLMRMKKSQWQEVIDLNLTGVFLCTQAAAKIMMKKKKGRIINIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYASRSITVNAVAPGFIASDMTAKLGQDIEKKILETIPLGRYGQPEEVAGLVEFLALNQAASYITGQVIYYSPVKIKNDRITWLN 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00431 328 Gene3D - 77 315 - -
Pumo1g00431 328 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 227 246 IPR002347 -
Pumo1g00431 328 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 165 IPR002347 -
Pumo1g00431 328 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 207 215 IPR002347 -
Pumo1g00431 328 Pfam short chain dehydrogenase 79 271 IPR002347 -
Pumo1g00431 328 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 214 242 IPR020904 GO:0016491
Pumo1g00431 328 PRINTS Glucose/ribitol dehydrogenase family signature 227 246 IPR002347 -
Pumo1g00431 328 PRINTS Glucose/ribitol dehydrogenase family signature 79 96 IPR002347 -
Pumo1g00431 328 PRINTS Glucose/ribitol dehydrogenase family signature 248 265 IPR002347 -
Pumo1g00431 328 PRINTS Glucose/ribitol dehydrogenase family signature 281 301 IPR002347 -
Pumo1g00431 328 PRINTS Glucose/ribitol dehydrogenase family signature 154 165 IPR002347 -
Pumo1g00431 328 PRINTS Glucose/ribitol dehydrogenase family signature 201 217 IPR002347 -
Pumo1g00431 328 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE 74 312 - -
Pumo1g00431 328 NCBIfam 3-oxoacyl-[acyl-carrier-protein] reductase 80 312 IPR011284 GO:0004316|GO:0006633|GO:0051287
Pumo1g00431 328 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 79 313 IPR036291 -
Pumo1g00431 328 FunFam 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic 77 316 - -
Pumo1g00431 328 CDD BKR_SDR_c 79 312 - -
Pumo1g00431 328 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 78 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00431 Pumo-Chr1 5971298 5975523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00431 21 310 Acyl Lipid Metabolism Gene Families AT1G24360 71.724 4.25e-151 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00431 K00059 - gmx:100809809 575.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00431 1 5971298 5975523 Pumo6g01282 6 16995949 16998574 PCT