Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01240 ATGCCTGGTTTTGTGGCTGAAAAGAAGAGATTTACAGAGCCAAATATGTGTTTTCCCAATTTGACCAACCATGATAAACCAACTCTTACAAAAAGCAATCATTGTGTGATGTCTGAGGCTCTGGATGATGATGATGATGATGATGGTAGTAGCCCCATCCTACCTGGGCTGCCTGATGATGTTTCAAAGCACTGCCTTGCACTCGTGCCTCGTTCGAACTTCCCGGCCATGGGTGGTGTCTGTAAGAGATGGAGGTGCTTTATTCGAAGCAAGGAATTTATAACCGTGCGAAAATTGGCTGGGATGACTGAGGAATGGCTCTATATCTTGACAGCCGGTAGTGAAGGAAAAGGGAGCCATTGGGAGGTCATGGATTGTCTCGGTCATAACCGCCGATCTCTTCCACCAATGCCTGGTCCAGCAAAGGCTGGCTTTGGGGTAGTGGTTCTTAATGGAAAGCTCCTTGTTATGGCTGGTCATTCATCAATTGATGGAACTGCATCTGTCTCAGCAGAGGTTTACCAATATGATTCTTGCCTCAACAGCTGGAGCAGATTGTCAAACATGAATGTGGCTCGGTATGACTTTGCCTGTGCTGAAGTCAACGGCTTGGTTTATGCCGTTGGAGGCTATGGCGCAACAGGTGACAGTCTCTCCAGTGCAGAGGTGTATGATCTGGATACCGACAAGTGGACGCCGATAGAGAGCCTTCGTCGCCCGAGATGGGGTTGCTTTGCCTGTGGATTTGAGGGCAACCTCTATGTCATGGGTGGAAGGTCAAACTTCACAATTGGAAACTCCAAGTTTGTTGATGTCTACAACCCCAAGAAACACAACTGGTGTGAGATGAAAAATGGGTGTGTGATGGTCACTGCTCATGCAGTGTTAGAAAAGAAGTTGTTTTGTATGGAGTGGAAGAATCAGAGGAAGTTGGCAATATTCAATCCAGAGGACAATTCATGGAAAATGGTACCAGTCCCTTTAACAGGGAGTTCAAGCATTGGTTTTCGGTTCGGGATACTGGATGGTAAGTTGTTGCTGTTCTCACTGAAGGAAGAGCCTTCATATAAGACTTTGTTGTATGATCCAAATGCAGCACCAGGATCTGAGTGGCAGACTTCTGATATAAGACCATCTGGTTTGTGCTTATGCAGTGTAACTATCAAGGCCTGA 1173 0.4638 MPGFVAEKKRFTEPNMCFPNLTNHDKPTLTKSNHCVMSEALDDDDDDDGSSPILPGLPDDVSKHCLALVPRSNFPAMGGVCKRWRCFIRSKEFITVRKLAGMTEEWLYILTAGSEGKGSHWEVMDCLGHNRRSLPPMPGPAKAGFGVVVLNGKLLVMAGHSSIDGTASVSAEVYQYDSCLNSWSRLSNMNVARYDFACAEVNGLVYAVGGYGATGDSLSSAEVYDLDTDKWTPIESLRRPRWGCFACGFEGNLYVMGGRSNFTIGNSKFVDVYNPKKHNWCEMKNGCVMVTAHAVLEKKLFCMEWKNQRKLAIFNPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLKEEPSYKTLLYDPNAAPGSEWQTSDIRPSGLCLCSVTIKA 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01240 390 SMART kelc_smart 252 300 IPR006652 GO:0005515
Pumo6g01240 390 SMART kelc_smart 204 251 IPR006652 GO:0005515
Pumo6g01240 390 SMART kelc_smart 153 203 IPR006652 GO:0005515
Pumo6g01240 390 SUPERFAMILY Kelch motif 104 349 IPR015915 GO:0005515
Pumo6g01240 390 SMART fbox_2 57 97 IPR001810 GO:0005515
Pumo6g01240 390 Pfam Kelch motif 192 237 IPR006652 GO:0005515
Pumo6g01240 390 Pfam Kelch motif 143 190 IPR006652 GO:0005515
Pumo6g01240 390 CDD F-box_AtAFR-like 53 97 - -
Pumo6g01240 390 PANTHER OS02G0202900 PROTEIN 8 386 IPR045887 -
Pumo6g01240 390 Gene3D - 90 388 IPR015915 GO:0005515
Pumo6g01240 390 Pfam Kelch motif 241 285 IPR011498 GO:0005515
Pumo6g01240 390 SUPERFAMILY F-box domain 50 94 IPR036047 GO:0005515
Pumo6g01240 390 Pfam F-box domain 56 93 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01240 Pumo-Chr6 16458345 16460278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01240 57 235 Miscellaneous Gene Families AT4G33900 27.979 3.95e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01240 - - gmx:100815474 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01240 6 16458345 16460278 Pumo6g01240 6 16458345 16460278 ECH
Pumo1g00443 1 6088017 6089438 Pumo6g01240 6 16458345 16460278 PCT