Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00443 ATGCCTGGTTTTACTGTTGGAAAGAAGAGATTTATCCAGCCAAATATGTGTTTCACCAATTTGATCAATCAAGATAAATCAACTCTTTCCCAAAGCAATAATTGTTTATTCCCTGAGGCACTGAATAAAGATTATAGCCCTATTCTACCTGGGCTGCCTGATGATGTGGCTGAGTATTGTCTTGCACTTGTGCCTCGTTCCAACTTCCCTGCTATGGGTGGTGTCTGTAAGAGATGGAGGTCGTTTATTCAAAGCAAAGAATTCGCTACTGTGCGAAAATTGGCTGGGATGCTTGAGGAATGGCTCTATTTCTTAACAACGGACTGTGAAGGAAAGGAAAGTCGTTGGGAGGTTATGGATTGTCTCGGTCATAAATCCCAATCTCTTCCACCAATGCCTGGTCCTGGAAGGGCCGGGTTTGGAGTGGTGGTTCTTAATGGAAAGCTTCTTGTTATGGCTGGTTATTCAATTATTGAAGGAACTCCCTTTACCTCAGCAGAGGTTTACCAATATAATTCTTGCCTCAACAGCTGGAGCAGATTGTCAAACATGAATGTGGCTCGATATGACTTCGCTTGTGCTGAAGTCAATGGCTTGGTTTATGCTGTTGGAGGCTATGGGGTGAATGGTGACAGTCTCTCCAGTGCTGAGGTGTATGATCCAGATACTGATAAGTGGACACTGATAGAGAGCCTTCGTCGCCCGAGATGGGGTTGTTTTGCTTGTGGATTTGAGGGTAAGCTCTATGTCATGGGTGGAAGGTCAAGCTTTACAATTGGAAATTCCAAGTGTGTTGATATATACAACCCTGAGAGGCACAGCTGGCGTGAGATTAAGAATGGCTGTGTTATGGTCACAGCTCATGCAGTAATAGGAAAGAAGTTGTTCTGCATAGAGTGGAAGAACCAGCGGAAGCTAGCTATATTCAGTCCAGAGGACAATTCATGGAAAATGGTACCAGTTCCATTGACAGGGAGCTCAAGTATTGGTTTTCGATTTGGGATACTGGATGGAAAGTTGCTGCTATTCCCTCTGGAGGCTGAACCTACTTATCAAACATTGTTGTATGATCCAAATGCATCTTTGGGGTCAGAGTGGCAAACTTGTGACATAAGGCCATCTGGTTTGTGCTTGTATTGTGTAACAATCAAGGCATGA 1158 0.4396 MPGFTVGKKRFIQPNMCFTNLINQDKSTLSQSNNCLFPEALNKDYSPILPGLPDDVAEYCLALVPRSNFPAMGGVCKRWRSFIQSKEFATVRKLAGMLEEWLYFLTTDCEGKESRWEVMDCLGHKSQSLPPMPGPGRAGFGVVVLNGKLLVMAGYSIIEGTPFTSAEVYQYNSCLNSWSRLSNMNVARYDFACAEVNGLVYAVGGYGVNGDSLSSAEVYDPDTDKWTLIESLRRPRWGCFACGFEGKLYVMGGRSSFTIGNSKCVDIYNPERHSWREIKNGCVMVTAHAVIGKKLFCIEWKNQRKLAIFSPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFPLEAEPTYQTLLYDPNASLGSEWQTCDIRPSGLCLYCVTIKA 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00443 385 SMART kelc_smart 148 198 IPR006652 GO:0005515
Pumo1g00443 385 SMART kelc_smart 247 294 IPR006652 GO:0005515
Pumo1g00443 385 SMART kelc_smart 199 246 IPR006652 GO:0005515
Pumo1g00443 385 SUPERFAMILY Kelch motif 99 344 IPR015915 GO:0005515
Pumo1g00443 385 PANTHER OS02G0202900 PROTEIN 8 378 IPR045887 -
Pumo1g00443 385 Gene3D - 86 382 IPR015915 GO:0005515
Pumo1g00443 385 SMART fbox_2 52 92 IPR001810 GO:0005515
Pumo1g00443 385 SUPERFAMILY F-box domain 46 89 IPR036047 GO:0005515
Pumo1g00443 385 Pfam F-box domain 51 88 IPR001810 GO:0005515
Pumo1g00443 385 Pfam Kelch motif 187 232 IPR006652 GO:0005515
Pumo1g00443 385 Pfam Kelch motif 137 185 IPR006652 GO:0005515
Pumo1g00443 385 Pfam Kelch motif 239 279 IPR006652 GO:0005515
Pumo1g00443 385 CDD F-box_AtAFR-like 48 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00443 Pumo-Chr1 6088017 6089438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00443 52 230 Miscellaneous Gene Families AT4G33900 28.205 5.46e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00443 - - gmx:100802912 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00443 1 6088017 6089438 Pumo6g01240 6 16458345 16460278 PCT