Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01223 ATGAGAACAAGGAGAGGAGCGTGCTATTCTGGAGTTGTCTCAAGGATGTGTTCCGATGTGAGGCTTGCGAAGAAAAACAAGGATCTGCACATGCATATGCATATGCGTGTCCCCGGAGACTCCATTATTTATAGCCGGAAAAGGCTGAAGAAAACGCCGGAAAAAACCGCCGCCGCCGGCGATTGCGATTTTTTCGAGTCTTTGCCGGACGACCTCGTAATCTCTATCTTCTGCAAGCTTAGTTCCACCGCCACTAAACCTTCCGATTTCGTCAATTTCATCCGCTTGTATTATCCAAAGCCTCGCCGAGAACTTTCGCTGTTAAAGCAAAAGATTGGTGCGATTCTGCACACCGTTTTCTCAAAATCTGTGCCGATGCCGGAAACGTTGAAGGCCTGCTACACTTTAGGCATGATTCGGTTCTACTGTTTGCAAAACCGAGGGAGCGGCGCGTCGTTGATGGCGAAGGCGGCGATTAACTCTCACGCGCGGGCTCTGTACGCGCTAGCAGTGATTCAATTCAACGGCAGCGGCGGGACGAAGAGCGACAAGGACCTACGCGCCGGCGTGGCGTTGTGCGCGAGAGCGGCGTTTCTCGGCGACGTTGACGCGCTGCGCGAGCTCGGCCACTGCCTGCAAGACGGTTACGGCGTGCGGCAGAACATCGCCGAGGGTCGGCGCTTTCTCCTCGCCGCCGTGCTTTCCATTGGTGCCGACGCGCGCAACTGGCTGAGTTGGAGTCTTCAACCGCAGCACAGGCAAGGGTCCGGGTGTCCTTTGCTCAGTGATTTCGGATGCAACGTGCCGGCGCCGGAGGTTCACCCGGCGAGCCGGTTCATGGCGGAGTGGTTCGCCGAGCGCGGCGGTTCGCCGGGACCGGGGCTGAGGCTGTGCTCTCACGCGGGGTGCGGGAGGCCCGAGACGAGGAAGCACGAGTTTCGAAGGTGTTCTGTGTGTGGCGCGGTGAATTATTGCTCACGCGCGTGCCAAGCGCTTGATTGGAAGTTCCGGCACAAGGCGGAGTGCGCCCCCGTGGAGCGGTGGCTCGACGAGGACGGCGAAGATGTCGGTGACGACGACGTTGACGGAGAGGTGGAGGTTATGGTAGATAGTTAG 1116 0.5833 MRTRRGACYSGVVSRMCSDVRLAKKNKDLHMHMHMRVPGDSIIYSRKRLKKTPEKTAAAGDCDFFESLPDDLVISIFCKLSSTATKPSDFVNFIRLYYPKPRRELSLLKQKIGAILHTVFSKSVPMPETLKACYTLGMIRFYCLQNRGSGASLMAKAAINSHARALYALAVIQFNGSGGTKSDKDLRAGVALCARAAFLGDVDALRELGHCLQDGYGVRQNIAEGRRFLLAAVLSIGADARNWLSWSLQPQHRQGSGCPLLSDFGCNVPAPEVHPASRFMAEWFAERGGSPGPGLRLCSHAGCGRPETRKHEFRRCSVCGAVNYCSRACQALDWKFRHKAECAPVERWLDEDGEDVGDDDVDGEVEVMVDS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01223 371 Gene3D Tetratricopeptide repeat domain 125 288 IPR011990 GO:0005515
Pumo6g01223 371 SUPERFAMILY HIT/MYND zinc finger-like 297 347 - -
Pumo6g01223 371 ProSiteProfiles Zinc finger MYND-type profile. 300 342 IPR002893 -
Pumo6g01223 371 SUPERFAMILY HCP-like 132 233 - -
Pumo6g01223 371 FunFam Predicted protein 290 347 - -
Pumo6g01223 371 Gene3D - 294 346 - -
Pumo6g01223 371 PANTHER MYND DOMAIN-CONTAINING 40 357 IPR044508 -
Pumo6g01223 371 Pfam MYND finger 302 342 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01223 Pumo-Chr6 16225137 16226548 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01223 - - gmx:100798174 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01223 6 16225137 16226548 Pumo6g01223 6 16225137 16226548 ECH
Pumo1g00456 1 6179999 6181985 Pumo6g01223 6 16225137 16226548 PCT