Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00456 ATGCGAACGAGGAGACGCCTTTGTTATCCTTCAGTTCCAGTTCCAGTTCCAACCATGTCTTGCCGGAAAAGACAAAAGACATCGCCGGACAAATCCTCCGACTTCTTCGACTCTCTCCCCGACGACCTCGTCCTCTCTATCCTCTGCAAGCTCAGCTCCACCGCAACTTCCCCCTCCGATTTCATTAGTGTTTTAATAACGTGCAAGAGACTAAACTCCTTAGGCCTTCACTCTCTTGTGTTGTCAAAAGCATCCCACAAAACATTATCAGTCAAAGCCAAAAACTGGTGCGACTCTGTTCACCGTTTCCTCAAACATTGTGCCGATGCCGGAAACATTGAAGCCTGTTACACTCTCGGCATGATTCGGTTTTATTGTTTGCAAAACAGAGGGAGCGGCGCGTCGCTGATGGCGAAGGCGGCGGTGAACTCTCACGCGCCGGCGCTGTACTCGCTCGCGGTGATACAGTTCAACGGAAGCGGCGGCACGAAAAACGACAAGGACCTTAGAGCGGGTGTGGCGCTTTGCGCACGCGCGGCTTTCCTCGGTCACATCGACGCGCTGAGAGAGCTTGGTCATTGCTTGCAAGACGGTTACGGCGTTAAGCAGAACGTAACGGAAGGACGACGCTTTTTGGTGCAAGCCAACGCGCGTGAACTCGCCGCCGTGCTCTCCGCCGGAAATAACAAGCGCCCCTGGCTGACGTGGAGCCTCCACCCGCGGCTCCGGTCGGCCACCGGGTCGGGTTGTCCGTTGTTAAGTGATTACGGTTGCAACGTGCCGGCGCCGGAGGCTCACCCGGCGAGTCGGTTCATGTCGGAGTGGTTTGATATTCGGGGCGGGTCGTCGGGTCCGGGTACGAGGCTTTGTTCGCATTCGGGTTGCGGGCGACCCGAGACAAGGAGGCACGAGTTTCGAAGGTGTTCAGTTTGCGGTGTGGTGAATTATTGCTCACGCGCGTGTCAGGCGCTTGATTGGAAGTTCCGGCACAAGGCCGAATGTGCTCACGTTGAGAGGTGGCTCGATGACGACGGCGAAGATGCTGCCGTCGAGGATGACGGCGGCGTCGGTGACGGAGTAATGATGGTTAATAGTTAG 1098 0.5638 MRTRRRLCYPSVPVPVPTMSCRKRQKTSPDKSSDFFDSLPDDLVLSILCKLSSTATSPSDFISVLITCKRLNSLGLHSLVLSKASHKTLSVKAKNWCDSVHRFLKHCADAGNIEACYTLGMIRFYCLQNRGSGASLMAKAAVNSHAPALYSLAVIQFNGSGGTKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVKQNVTEGRRFLVQANARELAAVLSAGNNKRPWLTWSLHPRLRSATGSGCPLLSDYGCNVPAPEAHPASRFMSEWFDIRGGSSGPGTRLCSHSGCGRPETRRHEFRRCSVCGVVNYCSRACQALDWKFRHKAECAHVERWLDDDGEDAAVEDDGGVGDGVMMVNS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00456 365 CDD F-box_SF 37 74 - -
Pumo1g00456 365 SUPERFAMILY F-box domain 24 80 IPR036047 GO:0005515
Pumo1g00456 365 Gene3D - 282 339 - -
Pumo1g00456 365 ProSiteProfiles Zinc finger MYND-type profile. 292 334 IPR002893 -
Pumo1g00456 365 PANTHER MYND DOMAIN-CONTAINING 1 355 IPR044508 -
Pumo1g00456 365 SUPERFAMILY HIT/MYND zinc finger-like 290 339 - -
Pumo1g00456 365 SUPERFAMILY HCP-like 101 216 - -
Pumo1g00456 365 FunFam Predicted protein 282 339 - -
Pumo1g00456 365 Gene3D Tetratricopeptide repeat domain 82 231 IPR011990 GO:0005515
Pumo1g00456 365 Pfam MYND finger 295 334 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00456 Pumo-Chr1 6179999 6181985 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00456 - - gmx:100798136 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00456 1 6179999 6181985 Pumo6g01223 6 16225137 16226548 PCT