Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01220 ATGGAGAGGAGACGACCACCCACCAGCATTATTCATTACAGTTGCAGCAGAGAGATCATAAACTCAAAGCCACTACGCGTGCGTGCCCTAAGAAGGAGACCAATGAAAATGAGACTAGTACTAGTGTCCCTGTGGCTGTGCCTCTTTGGAGTGTCGGAGGGAGCGGATTTGGCGGCCAAGTGCAACCTGCTGGTTCAGAAAGTGCTGCCGTGTCTGAACTTCGCGACGGGGCAGGCGGCGGTGCCGACGAAGGACTGCTGCACGGCGACGTCGGAGATAAAGAAGAGCGACCCGGAGTGCCTCTGCTTCGCGATCCAGCAGACTCACAAGGGCAGTCCGGAGGTGAAAAGCATGGGCATTCAAGAGGGTAGGCTTCTTCAGCTCCCTCAAGCATGTAACTTGAAGAATGCCAGCACCATCAACTGTCCTAAGCTTCTGGGTCTATCTCCAAACTCCCCTGACGCTGCTATCTTCAGGAATGCTTCGTTGAAAACCAATTCGGCTTCAACAGTGGGAACTCCAACACCACCAGTCTCAGACAACCACAAGGTCTCTTACGGAAACGTTCTTAGACCTGTTTTCATCGCAGACCTAATAGCTGTTCTTTGGGCCATTCTCCTCGTCGTGATTCCAATTTGTTCTGTCAACATTTAA 654 0.5199 MERRRPPTSIIHYSCSREIINSKPLRVRALRRRPMKMRLVLVSLWLCLFGVSEGADLAAKCNLLVQKVLPCLNFATGQAAVPTKDCCTATSEIKKSDPECLCFAIQQTHKGSPEVKSMGIQEGRLLQLPQACNLKNASTINCPKLLGLSPNSPDAAIFRNASLKTNSASTVGTPTPPVSDNHKVSYGNVLRPVFIADLIAVLWAILLVVIPICSVNI 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01220 217 SMART aai_6 61 142 IPR016140 -
Pumo6g01220 217 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 59 142 IPR036312 -
Pumo6g01220 217 CDD AAI_LTSS 68 134 - -
Pumo6g01220 217 Gene3D - 58 140 IPR036312 -
Pumo6g01220 217 Pfam Probable lipid transfer 53 142 IPR016140 -
Pumo6g01220 217 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 49 172 IPR043325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01220 Pumo-Chr6 16144396 16146946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01220 60 209 Acyl Lipid Metabolism Gene Families AT1G27950 44.667 1.35e-41 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01220 - - gmx:100799403 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01220 6 16144396 16146946 Pumo6g01220 6 16144396 16146946 ECH
Pumo1g00461 1 6255085 6258059 Pumo6g01220 6 16144396 16146946 PCT